>SSK256 (SSK256Q) /CSM/SS/SSK2-C/SSK256Q.Seq.d/
XXXXXXXXXXATAATAATAATAATAATAATAATAGTAATAATAATAATAAAAATAAAGAG
AAAGATTTTAATCTTGATAAAATCGACCAAGAAAAAGATAATGGTGATAAATCGAAAAGT
AGTCAAGATAGTGAAGCTATTGATAACTCTCAAGAATATAGAAATTATATGGCTGCAACT
GAAGGTCTATTCCAGACCGAAATATCAAAAGAGGATTTCATCAAATTATAATAAAATTAT
TATAATAAGAAA

---IIIIIIIVIIIIKIKRKILILIKSTKKKIMVINRKVVKIVKLLITLKNIEIIWLQLK
VYSRPKYQKRISSNYNKIIIIR

Frame A:
---*************k*rerf*s**nrprkr*w**iek*sr**sy**lsri*klygcn*
rsipdrnikrgfhqiiikll**e


Frame B:
---nnnnnnnsnnnnknkekdfnldkidqekdngdkskssqdseaidnsqeyrnymaate
glfqteiskedfikl**nyynkk


Frame C:
---IIIIIIIVIIIIKIKRKILILIKSTKKKIMVINRKVVKIVKLLITLKNIEIIWLQLK
VYSRPKYQKRISSNYNKIIIIR

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK256 (SSK256Q) /CSM/SS/SSK2-C/SSK256Q.Seq.d/                        389   e-107
SSG774 (SSG774Q) /CSM/SS/SSG7-D/SSG774Q.Seq.d/                         42   0.004
SSL442 (SSL442Q) /CSM/SS/SSL4-B/SSL442Q.Seq.d/                         40   0.015
FC-BC10 (FC-BC10Q) /CSM/FC/FC-BC/FC-BC10Q.Seq.d/                       40   0.015
FC-AN24 (FC-AN24Q) /CSM/FC/FC-AN/FC-AN24Q.Seq.d/                       40   0.015
FC-197 (FC-197Q) /CSM/CG/CG-FC/FC-197Q.Seq.d/                          40   0.015
VSJ464 (VSJ464Q) /CSM/VS/VSJ4-C/VSJ464Q.Seq.d/                         38   0.060
VSA680 (VSA680Q) /CSM/VS/VSA6-D/VSA680Q.Seq.d/                         38   0.060
SSD796 (SSD796Q) /CSM/SS/SSD7-D/SSD796Q.Seq.d/                         38   0.060
VSA633 (VSA633Q) /CSM/VS/VSA6-B/VSA633Q.Seq.d/                         36   0.24

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BX539343|BX539343.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-58K6.    46   2e-07  2
BX936432|BX936432.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-165O5.    46   2e-07  2
BX572646|BX572646.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-245O11.    44   3e-06  2
BX928740|BX928740.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-245J22.    44   3e-06  2
BX465207|BX465207.12 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-103I16.    36   7e-04  2
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   0.002  11
X95275|X95275.1 P.falciparum complete gene map of plastid-like DNA (IR-A).    34   0.008  4
BX004781|BX004781.7 Zebrafish DNA sequence from clone CH211-149G8 in linkage group 1.    42   0.010  2
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   0.033  10
V00701|V00701.1 Yeast mitochondrial HpaII-fragment 2.              34   0.039  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928168_462(CU928168|pid:none) Kluyveromyces thermotolerans str...    32   6.9

 psg: 1.01  gvh: 0.39  alm: 0.22  top: 0.93  tms: 0.07  mit: 0.34  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSK256 is nuc

>SSK256Z.Seq
----------ATAATAATAATAATAATAATAATAGTAATAATAATAATAAAAATAAAGAG
AAAGATTTTAATCTTGATAAAATCGACCAAGAAAAAGATAATGGTGATAAATCGAAAAGT
AGTCAAGATAGTGAAGCTATTGATAACTCTCAAGAATATAGAAATTATATGGCTGCAACT
GAAGGTCTATTCCAGACCGAAATATCAAAAGAGGATTTCATCAAATTATAATAAAATTAT
TATAATAAGAAA