SSK248
Library SS
(Link to library)
Clone ID SSK248
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15040-1
Original site URL
Representative seq. ID SSK248E
(Link to Original site)
Representative DNA sequence
>SSK248 (SSK248Q) /CSM/SS/SSK2-B/SSK248Q.Seq.d/
CTTAAACACATTTATAAATTTAACAAACAACCGAATTAATTATTTGTTATAAAAAAAAAT
AAAAAATAAAACTTAAATAATTTTTTTTAAAACGAAATAGAAATTTAAACATATAAAATG
CCTAAGAATAAGGGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAA
AAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTA
GGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGT
GGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAATTCAACTTCTA
CCAAAATGATAAAGCTGATGTTATCCNTCGTTACAATGTCGATGAAGCTCGTAATCTTAA
AACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGATGATGT
TGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATNTCGATATTGATNCTCTTTAAAC
AAAGACNTTATTTNTNTATNGANATATTAAACAGTATTTAATGCTGTAGTATAATAGTAA
CAGAGCAAANTNNATTATNNNNNNNAAAAAAAAAAAAACAACATTTAACTCTTTTTTTTT
TTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAATTAAAAAAAAAA
AAAAGATATAAAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence
lkhiykfnkqpn*lfvikknkk*nlnnff*neiei*TYKMPKNKGKGGKNRRRGKNENEQ
KRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLL
PK**s*cypslqcr*ss*s*nlw*itrnr*n**n*ci**c*rysirirc*r*xry*xsln
kdxixxxxy*tvfnavv***qskxxyxxxkkknni*lffffllkqkkkkdkdwl*klkkk
krykkk


Translated Amino Acid sequence (All Frames)
Frame A:
lkhiykfnkqpn*lfvikknkk*nlnnff*neiei*TYKMPKNKGKGGKNRRRGKNENEQ
KRELQFKEEGQEYAQVLRMLGNGRLEASCFDGEKRLCHISGRLRKKEWINNGDIILIQLL
PK**s*cypslqcr*ss*s*nlw*itrnr*n**n*ci**c*rysirirc*r*xry*xsln
kdxixxxxy*tvfnavv***qskxxyxxxkkknni*lffffllkqkkkkdkdwl*klkkk
krykkk


Frame B:
lntfinltnnrinyll*kkiknkt*iiffktk*kfkhikclrirekvvkiveevrtrmnk
renfnskkkaknmlky*ec*vmvv*kplvlmvknvyvtlvvd*errngstmvisf*fnfy
qndkadvixrynvdearnlktygelpetarinetdafddvedipfefvaeddxdidxl*t
ktlfxyxxikqylml*ynsnraxxixxxkkkkttfnsffffy*nkkkkririgykn*kkk
kdikk


Frame C:
*thl*i*qtteliicykkk*kiklk*fflkrnrnlni*na*e*gkrw*ks*kr*ere*tk
ertsiqrrrpricssiknvr*wsfrsllf*w*ktfmsh*w*ikkegmdqqw*yhfnstst
kmiklmlsxvtmsmklvilklmvnyqkplelmklmhlmmlkifhsnsllkmxsilxlfkq
rxyxxxxilnsi*ccsiivteqxxlxxxkkkkqhltlffffietkkkkg*glvikikkkk
ki*kk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK248 (SSK248Q) /CSM/SS/SSK2-B/SSK248Q.Seq.d/ 985 0.0
SSK711 (SSK711Q) /CSM/SS/SSK7-A/SSK711Q.Seq.d/ 948 0.0
AHL228 (AHL228Q) /CSM/AH/AHL2-B/AHL228Q.Seq.d/ 938 0.0
VSF521 (VSF521Q) /CSM/VS/VSF5-A/VSF521Q.Seq.d/ 930 0.0
VHD658 (VHD658Q) /CSM/VH/VHD6-C/VHD658Q.Seq.d/ 930 0.0
FC-AJ05 (FC-AJ05Q) /CSM/FC/FC-AJ/FC-AJ05Q.Seq.d/ 930 0.0
SSF521 (SSF521Q) /CSM/SS/SSF5-A/SSF521Q.Seq.d/ 775 0.0
SSL769 (SSL769Q) /CSM/SS/SSL7-C/SSL769Q.Seq.d/ 563 e-159
VSC777 (VSC777Q) /CSM/VS/VSC7-D/VSC777Q.Seq.d/ 369 e-101
VSA233 (VSA233Q) /CSM/VS/VSA2-B/VSA233Q.Seq.d/ 323 2e-87

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

CB909835|CB909835.1 USDA-FP_101578 Adult Alate Brown Citrus Aphid Toxoptera citricida cDNA clone WHWTC-22_F01 5', mRNA sequence. 80 3e-28 4
BX549381|BX549381.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse107f06_q1c. 70 4e-17 4
BX558353|BX558353.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected midgut library, clone Tse38a11_q1c. 70 4e-17 4
BF294231|BF294231.1 001PbG02 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence. 70 1e-16 2
CB890651|CB890651.1 taa75h11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9U9L3 Q9U9L3 TRANSLATION INITIATION FACTOR 4C ;, mRNA sequence. 56 4e-15 3
CD535276|CD535276.1 LeukoN5_1_A08.g1_A027 Unstimulated peripheral blood leukocytes N5 Equus caballus cDNA clone LeukoN5_1_A08_A027 5', mRNA sequence. 50 4e-12 4
T18202|T18202.1 0812c3 czapPFDd2.1, Debopam Chakrabarti Plasmodium falciparum cDNA clone 0812c 5', mRNA sequence. 74 1e-11 2
U11585|U11585.1 Saccharomyces cerevisiae X2180 translation initiation factor 1A (TIF11) gene, complete cds. 54 3e-10 2
BG487302|BG487302.1 df95e07.y1 Xenopus laevis oocyte non normalized Xenopus laevis cDNA clone IMAGE:3747157 5' similar to SW:IF1A_HUMAN P47813 EUKARYOTIC TRANSLATION INITIATION FACTOR 1A ;, mRNA sequence. 52 1e-09 3
BG553439|BG553439.1 dab84b08.y1 NICHD XGC Emb4 Xenopus laevis cDNA clone IMAGE:4203614 5' similar to SW:IF1A_HUMAN P47813 EUKARYOTIC TRANSLATION INITIATION FACTOR 1A ;, mRNA sequence. 52 1e-09 3
dna update 2003. 9. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BT047385_1(BT047385|pid:none) Salmo salar clone ssal-evd-517-113... 95 2e-35
BT046728_1(BT046728|pid:none) Salmo salar clone ssal-evd-566-043... 94 3e-35
BT046786_1(BT046786|pid:none) Salmo salar clone ssal-evf-567-357... 94 4e-35
BT050065_1(BT050065|pid:none) Salmo salar clone ssal-evd-558-268... 94 8e-35
AY911362_1(AY911362|pid:none) Bos taurus clone IMAGE:7961501 X-l... 94 8e-35
AK030774_1(AK030774|pid:none) Mus musculus 8 days embryo whole b... 94 8e-35
BT049466_1(BT049466|pid:none) Salmo salar clone ssal-evd-532-334... 93 8e-35
BT049173_1(BT049173|pid:none) Salmo salar clone ssal-eve-526-175... 93 8e-35
BT048310_1(BT048310|pid:none) Salmo salar clone ssal-evd-534-264... 94 2e-34
(P47813) RecName: Full=Eukaryotic translation initiation factor ... 94 2e-34
protein update 2009. 7. 8
PSORT

psg: 0.26 gvh: 0.37 alm: 0.55 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.04
nuc: 0.12 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for SSK248 is nuc

5' end seq. ID SSK248F
5' end seq.
>SSK248F.Seq
CTTAAACACATTTATAAATTTAACAAACAACCGAATTAATTATTTGTTATAAAAAAAAAT
AAAAAATAAAACTTAAATAATTTTTTTTAAAACGAAATAGAAATTTAAACATATAAAATG
CCTAAGAATAAGGGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAA
AAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTA
GGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGT
GGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAATTCAACTTAGA
GACTACCAAAATGATAAAGCTGATGTTATCCTTCGTTACAATGTCGATGAAGCTCGTAAT
CTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGAT
GATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATATTGATACTCTT
TAAACAAAGACATTATTTATATATAGACATATTAAACAGTATTTAATGCTGTAGTATAAT
AGTAACAGAGCAAATTAT----------
Length of 5' end seq. 618
3' end seq. ID SSK248Z
3' end seq.
>SSK248Z.Seq
----------CTACCAAAATGATAAAGCTGATGTTATCCGTCGTTACAATGTCGATGAAG
CTCGTAATCTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATG
CATTTGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATCTCGATATTG
ATCCTCTTTAAACAAAGACGTTATTTCTGTATCGAAATATTAAACAGTATTTAATGCTGT
AGTATAATAGTAACAGAGCAAAATTATNNNNNNNAAAAAAAAAAAAACAACATTTAACTC
TTTTTTTTTTTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAATTA
AAAAAAAAAAAAAGATATAAAAAAAAAAATAAA
Length of 3' end seq. 383
Connected seq. ID SSK248P
Connected seq.
>SSK248P.Seq
CTTAAACACATTTATAAATTTAACAAACAACCGAATTAATTATTTGTTATAAAAAAAAAT
AAAAAATAAAACTTAAATAATTTTTTTTAAAACGAAATAGAAATTTAAACATATAAAATG
CCTAAGAATAAGGGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAA
AAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTA
GGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGT
GGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAATTCAACTTAGA
GACTACCAAAATGATAAAGCTGATGTTATCCTTCGTTACAATGTCGATGAAGCTCGTAAT
CTTAAAACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGAT
GATGTTGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATATCGATATTGATACTCTT
TAAACAAAGACATTATTTATATATAGACATATTAAACAGTATTTAATGCTGTAGTATAAT
AGTAACAGAGCAAATTAT----------CTACCAAAATGATAAAGCTGATGTTATCCGTC
GTTACAATGTCGATGAAGCTCGTAATCTTAAAACTTATGGTGAATTACCAGAAACCGCTA
GAATTAATGAAACTGATGCATTTGATGATGTTGAAGATATTCCATTCGAATTCGTTGCTG
AAGATGATCTCGATATTGATCCTCTTTAAACAAAGACGTTATTTCTGTATCGAAATATTA
AACAGTATTTAATGCTGTAGTATAATAGTAACAGAGCAAAATTATNNNNNNNAAAAAAAA
AAAAACAACATTTAACTCTTTTTTTTTTTTTTATTGAAACAAAAAAAAAAAAAGGATAAG
GATTGGTTATAAAAATTAAAAAAAAAAAAAAGATATAAAAAAAAAAATAAA
Length of connected seq. 1001
Full length Seq ID SSK248E
Full length Seq.
>SSK248E.Seq
CTTAAACACATTTATAAATTTAACAAACAACCGAATTAATTATTTGTTATAAAAAAAAAT
AAAAAATAAAACTTAAATAATTTTTTTTAAAACGAAATAGAAATTTAAACATATAAAATG
CCTAAGAATAAGGGAAAAGGTGGTAAAAATCGTAGAAGAGGTAAGAACGAGAATGAACAA
AAGAGAGAACTTCAATTCAAAGAAGAAGGCCAAGAATATGCTCAAGTATTAAGAATGTTA
GGTAATGGTCGTTTAGAAGCCTCTTGTTTTGATGGTGAAAAACGTTTATGTCACATTAGT
GGTAGATTAAGAAAGAAGGAATGGATCAACAATGGTGATATCATTTTAATTCAACTTCTA
CCAAAATGATAAAGCTGATGTTATCCNTCGTTACAATGTCGATGAAGCTCGTAATCTTAA
AACTTATGGTGAATTACCAGAAACCGCTAGAATTAATGAAACTGATGCATTTGATGATGT
TGAAGATATTCCATTCGAATTCGTTGCTGAAGATGATNTCGATATTGATNCTCTTTAAAC
AAAGACNTTATTTNTNTATNGANATATTAAACAGTATTTAATGCTGTAGTATAATAGTAA
CAGAGCAAANTNNATTATNNNNNNNAAAAAAAAAAAAACAACATTTAACTCTTTTTTTTT
TTTTTATTGAAACAAAAAAAAAAAAAGGATAAGGATTGGTTATAAAAATTAAAAAAAAAA
AAAAGATATAAAAAAAAA
Length of full length seq. 738