SSK247
Library SS
(Link to library)
Clone ID SSK247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15679-1
Original site URL
Representative seq. ID SSK247P
(Link to Original site)
Representative DNA sequence
>SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/
AATAAATACTAACTTGTAAAAAAAAAAAAAAATAAAATAAAAATGTTTACAGAAAATCAA
AATAANAATCAAAGACANGCACTTAAAACTGAAATTAAAACAGTTTTTAATTCAGATAGT
GGTGTTACTTATTTTTCAATTTTAATTGAAACATCATCAAAAATGTCATTGTATAATGTA
ATTATTAAGACATTTATTACTCAACTTCAAAAAGCTAATAGAGAGTGTCAAATTCAAATC
ATTACCTATGGTGATAGTGTTAATACAATCTTTGAATTTGATTCGGAACCAAATGAATTA
AAAGATAGCTTAAAAGAAATTAAATTCTCTAAAGATAATGAAGAAGCAAAATTGGGTGAA
GCAATGAGAATGTGTTTCAATAATATCGAATCCAATTGGTCCAGTGATTTAATGTCAAAG
ATCATCATCATCAGTTCGGGTCAATCTACTGATGATTCAAGTGATGATTTAGTTGATATC
TTGAGTTTGGATAATAATAGTATCTATGGTTTGGCAGGCTGCAACCTAGCAAACAAATCA
TCCGATGAGGCTGTAAAAGATTTGCAATCACTTTTACCAGACCAAAAAGTTATCCCATTG
GGTAAGAATCCAAGCCAAGACATTAGATTGTTGATGAATGGTGGTGGTGGTGCTGCCAXX
XXXXXXXXATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAATCATC
ATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACA
AACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAACACCACC
ACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTATTGATGT
AGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTCAACAAATGA
ATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGAATGCTAA
TGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAGATTATCATC
CATTATTAAATCTTTTGATAATTCAGATTCCATTAAATTGGTTTTAAAGAAAAAACAAAA
ATTATTTTAAAAATTAACAAAACTAATAATAGTGGTAAAAAAATAAAAAAAAATAAAAAA
ATTAAAATAAATATAAAATAAAATAAATAAATAAAACCTTTTTAAAATAAAAAAAAAAAA
AAAAAA
sequence update 1998.11.12
Translated Amino Acid sequence
nky*LVKKKKNKIKMFTENQNXNQRXALKTEIKTVFNSDSGVTYFSILIETSSKMSLYNV
IIKTFITQLQKANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSKDNEEAKLGE
AMRMCFNNIESNWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGLAGCNLANKS
SDEAVKDLQSLLPDQKVIPLGKNPSQDIRLLMNGGGGAA---

---NSFNQTPIKNQPFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSASTPP
PPSQMLNEQPSKTINVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEMNAN
DWSITKESGTVLFESARLSSIIKSFDNSDSIKLVLKKKQKLF*kltkliivvkk*kkikk
lk*i*nkink*nlfkikkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
nky*LVKKKKNKIKMFTENQNXNQRXALKTEIKTVFNSDSGVTYFSILIETSSKMSLYNV
IIKTFITQLQKANRECQIQIITYGDSVNTIFEFDSEPNELKDSLKEIKFSKDNEEAKLGE
AMRMCFNNIESNWSSDLMSKIIIISSGQSTDDSSDDLVDILSLDNNSIYGLAGCNLANKS
SDEAVKDLQSLLPDQKVIPLGKNPSQDIRLLMNGGGGAA---

---iivliklqlkinlflnhhqllhlhqlsldhqfnnnnnkplplqlnhhhhhlhqhqhh
hhhhkclmnnqvklsm*llm*lliqvvpf*lhsklnlqqmnlsln*nvnllmklilk*ml
migvlqknlvqfysnlqdyhpllnlliiqiplnwf*rknknyfkn*qn***w*knkkk*k
n*nkykik*inktflk*kkkkk

Frame B:
intnl*kkkkik*kclqkikixikdxhlklklkqfliqivvllifqf*lkhhqkchcim*
llrhlllnfkkliesvkfkslpmvivliqslnlirnqmn*kia*kklnslkimkkqnwvk
q*ecvsiisnpigpvi*cqrssssvrvnllmiqvmi*lis*vwiiivsmvwqaat*qtnh
pmrl*kicnhfyqtkklshwvriqaktldc**mvvvvlp---

---**f*snsn*kstff*iiinfftftsfl*itnstttttnlyhfnsititiifisintt
ttitna**ttk*nyqcny*csy*fkwyrfnfirn*ifnk*icl*ikm*ty**n*s*nec*
*leyykriwysfirickiiihy*if**frfh*igfkektkiilkinktnnsgkkikknkk
ikinik*nk*ikpf*nkkkkkk

Frame C:
*iltckkkkk*nknvyrksk*xsktxt*n*n*nsf*fr*wcylffnfn*niiknviv*cn
y*diyystsks**rvsnsnhylw**c*ynl*i*fgtk*ikr*lkrn*il*r**rskig*s
nenvfq*yriqlvq*fnvkdhhhqfgsiy**fk**fs*ylefg***ylwfgrlqpskqii
r*gckrfaitftrpksypig*eskprh*ivdewwwwcc---

---NSFNQTPIKNQPFFESSSTSSPSPAFFRSPIQQQQQQTSTTSTQSPSPSSSSASTPP
PPSQMLNEQPSKTINVTIDVVTDSSGTVLTSFEIESSTNESVSELKCKLINEIDPEMNAN
DWSITKESGTVLFESARLSSIIKSFDNSDSIKLVLKKKQKLF*kltkliivvkk*kkikk
lk*i*nkink*nlfkikkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/ 1314 0.0
AHA357 (AHA357Q) /CSM/AH/AHA3-C/AHA357Q.Seq.d/ 1179 0.0
AHE569 (AHE569Q) /CSM/AH/AHE5-C/AHE569Q.Seq.d/ 1106 0.0
AHA131 (AHA131Q) /CSM/AH/AHA1-B/AHA131Q.Seq.d/ 1106 0.0
SHE684 (SHE684Q) /CSM/SH/SHE6-D/SHE684Q.Seq.d/ 1090 0.0
CHI279 (CHI279Q) /CSM/CH/CHI2-D/CHI279Q.Seq.d/ 1080 0.0
CHN788 (CHN788Q) /CSM/CH/CHN7-D/CHN788Q.Seq.d/ 1066 0.0
AHM223 (AHM223Q) /CSM/AH/AHM2-A/AHM223Q.Seq.d/ 1065 0.0
AHI541 (AHI541Q) /CSM/AH/AHI5-B/AHI541Q.Seq.d/ 1063 0.0
AHH355 (AHH355Q) /CSM/AH/AHH3-C/AHH355Q.Seq.d/ 1031 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence. 52 2e-14 18
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 56 6e-13 24
AP005140|AP005140.4 Homo sapiens genomic DNA, chromosome 11 clone:CMB9-65A1, complete sequence. 64 1e-09 7
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 34 2e-09 19
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 42 8e-09 21
AC135156|AC135156.2 Rattus norvegicus clone CH230-244I7, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 62 1e-08 2
AC114711|AC114711.3 Rattus norvegicus clone CH230-177M19, *** SEQUENCING IN PROGRESS ***, 26 unordered pieces. 56 2e-08 2
BZ115869|BZ115869.1 CH230-255D7.TVB CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-255D7, DNA sequence. 54 4e-08 3
BQ856044|BQ856044.1 QGB28H02.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB28H02, mRNA sequence. 66 5e-08 2
BF713613|BF713613.1 JAYS0026.GYL Schistosoma japonicum Lambda gt11 Express library Schistosoma japonicum cDNA clone JAYS0026.GY 5', mRNA sequence. 70 8e-08 1
dna update 2004. 2.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116305_17(AC116305|pid:none) Dictyostelium discoideum chromoso... 160 7e-38
CP000939_1534(CP000939|pid:none) Clostridium botulinum B1 str. O... 35 5.7
CP000962_1611(CP000962|pid:none) Clostridium botulinum A3 str. L... 35 5.7
CP000728_1501(CP000728|pid:none) Clostridium botulinum F str. La... 35 7.4
CP000777_231(CP000777|pid:none) Leptospira biflexa serovar Patoc... 35 7.4
AE017245_363(AE017245|pid:none) Mycoplasma synoviae 53, complete... 35 7.4
CP001083_1539(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 34 9.7
AB049544_1(AB049544|pid:none) Porcine enterovirus 10 gene for RN... 34 9.7
AF363453_1(AF363453|pid:none) Porcine enterovirus 9 strain UKG/4... 34 9.7

protein update 2009. 6.14
PSORT

psg: 0.61 gvh: 0.39 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.26 mip: 0.05
nuc: 0.04 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
12.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSK247 is cyt

5' end seq. ID SSK247F
5' end seq.
>SSK247F.Seq
AATAAATACTAACTTGTAAAAAAAAAAAAAAATAAAATAAAAATGTTTACAGAAAATCAA
AATAANAATCAAAGACANGCACTTAAAACTGAAATTAAAACAGTTTTTAATTCAGATAGT
GGTGTTACTTATTTTTCAATTTTAATTGAAACATCATCAAAAATGTCATTGTATAATGTA
ATTATTAAGACATTTATTACTCAACTTCAAAAAGCTAATAGAGAGTGTCAAATTCAAATC
ATTACCTATGGTGATAGTGTTAATACAATCTTTGAATTTGATTCGGAACCAAATGAATTA
AAAGATAGCTTAAAAGAAATTAAATTCTCTAAAGATAATGAAGAAGCAAAATTGGGTGAA
GCAATGAGAATGTGTTTCAATAATATCGAATCCAATTGGTCCAGTGATTTAATGTCAAAG
ATCATCATCATCAGTTCGGGTCAATCTACTGATGATTCAAGTGATGATTTAGTTGATATC
TTGAGTTTGGATAATAATAGTATCTATGGTTTGGCAGGCTGCAACCTAGCAAACAAATCA
TCCGATGAGGCTGTAAAAGATTTGCAATCACTTTTACCAGACCAAAAAGTTATCCCATTG
GGTAAGAATCCAAGCCAAGACATTAGATTGTTGATGAATGGTGGTGGTGGTGCTGCCA--
------
Length of 5' end seq. 658
3' end seq. ID SSK247Z
3' end seq.
>SSK247Z.Seq
----------ATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAATCA
TCATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAA
CAAACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAACACCA
CCACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTATTGAT
GTAGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTCAACAAAT
GAATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGAATGCT
AATGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAGATTATCA
TCCATTATTAAATCTTTTGATAATTCAGATTCCATTAAATTGGTTTTAAAGAAAAAACAA
AAATTATTTTAAAAATTAACAAAACTAATAATAGTGGTAAAAAAATAAAAAAAAATAAAA
AAATTAAAATAAATATAAAATAAAATAAATAAATAAAACCTTTTTAAAATAAAAAAAAAA
AAAAAAAA
Length of 3' end seq. 598
Connected seq. ID SSK247P
Connected seq.
>SSK247P.Seq
AATAAATACTAACTTGTAAAAAAAAAAAAAAATAAAATAAAAATGTTTACAGAAAATCAA
AATAANAATCAAAGACANGCACTTAAAACTGAAATTAAAACAGTTTTTAATTCAGATAGT
GGTGTTACTTATTTTTCAATTTTAATTGAAACATCATCAAAAATGTCATTGTATAATGTA
ATTATTAAGACATTTATTACTCAACTTCAAAAAGCTAATAGAGAGTGTCAAATTCAAATC
ATTACCTATGGTGATAGTGTTAATACAATCTTTGAATTTGATTCGGAACCAAATGAATTA
AAAGATAGCTTAAAAGAAATTAAATTCTCTAAAGATAATGAAGAAGCAAAATTGGGTGAA
GCAATGAGAATGTGTTTCAATAATATCGAATCCAATTGGTCCAGTGATTTAATGTCAAAG
ATCATCATCATCAGTTCGGGTCAATCTACTGATGATTCAAGTGATGATTTAGTTGATATC
TTGAGTTTGGATAATAATAGTATCTATGGTTTGGCAGGCTGCAACCTAGCAAACAAATCA
TCCGATGAGGCTGTAAAAGATTTGCAATCACTTTTACCAGACCAAAAAGTTATCCCATTG
GGTAAGAATCCAAGCCAAGACATTAGATTGTTGATGAATGGTGGTGGTGGTGCTGCCA--
--------ATAATAGTTTTAATCAAACTCCAATTAAAAATCAACCTTTTTTTGAATCATC
ATCAACTTCTTCACCTTCACCAGCTTTCTTTAGATCACCAATTCAACAACAACAACAACA
AACCTCTACCACTTCAACTCAATCACCATCACCATCATCTTCATCAGCATCAACACCACC
ACCACCATCACAAATGCTTAATGAACAACCAAGTAAAACTATCAATGTAACTATTGATGT
AGTTACTGATTCAAGTGGTACCGTTTTAACTTCATTCGAAATTGAATCTTCAACAAATGA
ATCTGTCTCTGAATTAAAATGTAAACTTATTAATGAAATTGATCCTGAAATGAATGCTAA
TGATTGGAGTATTACAAAAGAATCTGGTACAGTTTTATTCGAATCTGCAAGATTATCATC
CATTATTAAATCTTTTGATAATTCAGATTCCATTAAATTGGTTTTAAAGAAAAAACAAAA
ATTATTTTAAAAATTAACAAAACTAATAATAGTGGTAAAAAAATAAAAAAAAATAAAAAA
ATTAAAATAAATATAAAATAAAATAAATAAATAAAACCTTTTTAAAATAAAAAAAAAAAA
AAAAAA
Length of connected seq. 1256
Full length Seq ID -
Full length Seq. -
Length of full length seq. -