>SSK246 (SSK246Q) /CSM/SS/SSK2-B/SSK246Q.Seq.d/
TAATAATTAAGCTATGCACTGTCAAATCAATGAATTAGTGAACTCACGTGGATCCAATTT
TGGTGGTAGTGGTACATTTGATGATGTTCCACAATCTGGTGGTCGTGGTGGTTGGAGAGG
ATTTGGATTATGGAGATAAAATCCTTTCAACAATTGTATTGCATCCTCTTTTTTTATTTT
TATTTATTTTTTCCAAAAAACATCGAAATAATCTTTTGTAAATAAAAAAAAAAAAAAAAA
AAAAACTGGTGCTTTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXX

iiklctvksmn**THVDPILVVVVHLMMFHNLVVVVVGEDLDYGDKILSTIVLHPLFLFL
FIFSKKHRNNLL*ikkkkkkklvllgkkkkkkkk---

Frame A:
**lsyalsnq*iseltwiqfww*wyi**cstiwwswwleriwimeiksfqqlycilffyf
ylffpknieiifck*kkkkkknwcfwekkkkkkk---


Frame B:
nn*amhcqinelvnsrgsnfggsgtfddvpqsggrggwrgfglwr*npfnnciassffif
iyffqktsk*sfvnkkkkkkktgafgkkkkkkkk---


Frame C:
iiklctvksmn**THVDPILVVVVHLMMFHNLVVVVVGEDLDYGDKILSTIVLHPLFLFL
FIFSKKHRNNLL*ikkkkkkklvllgkkkkkkkk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO752 (VHO752Q) /CSM/VH/VHO7-C/VHO752Q.Seq.d/                        333   9e-91
VFF658 (VFF658Q) /CSM/VF/VFF6-C/VFF658Q.Seq.d/                        333   9e-91
SSK246 (SSK246Q) /CSM/SS/SSK2-B/SSK246Q.Seq.d/                        333   9e-91
VSC555 (VSC555Q) /CSM/VS/VSC5-C/VSC555Q.Seq.d/                        295   2e-79
VSH842 (VSH842Q) /CSM/VS/VSH8-B/VSH842Q.Seq.d/                         36   0.28
VSB545 (VSB545Q) /CSM/VS/VSB5-B/VSB545Q.Seq.d/                         36   0.28
VHO896 (VHO896Q) /CSM/VH/VHO8-D/VHO896Q.Seq.d/                         36   0.28
VHN751 (VHN751Q) /CSM/VH/VHN7-C/VHN751Q.Seq.d/                         36   0.28
VHE128 (VHE128Q) /CSM/VH/VHE1-B/VHE128Q.Seq.d/                         36   0.28
SSL777 (SSL777Q) /CSM/SS/SSL7-D/SSL777Q.Seq.d/                         36   0.28

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC101827|AC101827.10 Mus musculus, clone RP24-426P14, complete sequence.    44  0.93  1
AG221940|AG221940.1 Lotus corniculatus var. japonicus DNA, clone:LjB06f15_f.    44  0.93  1
BX248578|BX248578.6 Mouse DNA sequence from clone RP23-227K23 on chromosome 11.    38  1.2  3
AC124885|AC124885.4 Rattus norvegicus clone CH230-188E4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  3.7  1
AQ725084|AQ725084.1 HS_5403_A2_G08_T7A RPCI-11 Human Male BAC Library Homo sapiens genomic clone Plate=979 Col=16 Row=M, DNA sequence.    42  3.7  1
AC120415|AC120415.3 Mus musculus clone RP24-465P22, WORKING DRAFT SEQUENCE, 14 unordered pieces.    38  3.7  2
AC132252|AC132252.1 Mus musculus chromosome UNK clone RP24-450A24, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44  4.2  2
AC107719|AC107719.3 Mus musculus clone RP23-187P2, WORKING DRAFT SEQUENCE, 6 ordered pieces.    38  4.9  4
AL662998|AL662998.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0020O11.    40     14  1
AL844217|AL844217.7 Zebrafish DNA sequence from clone DKEY-218L17.    40     14  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A0LFC6) RecName: Full=Phenylalanyl-tRNA synthetase alpha chain;...    33   4.0
AY056469_1(AY056469|pid:none) Petromyzon marinus homeobox protei...    32   5.2
AL031745_47(AL031745|pid:none) Plasmodium falciparum DNA from MA...    32   5.2
(A4ZNR4) RecName: Full=Protein naked cuticle homolog 2;         ...    32   8.9
(A4ZNR5) RecName: Full=Protein naked cuticle homolog 2-like;    ...    32   8.9

 psg: 0.75  gvh: 0.62  alm: 0.22  top: 0.30  tms: 0.13  mit: 0.17  mip: 0.00
 nuc: 0.02  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 16.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSK246 is end

>SSK246F.Seq
TAATAATTAAGCTATGCACTGTCAAATCAATGAATTAGTGAACTCACGTGGATCCAATTT
TGGTGGTAGTGGTACATTTGATGATGTTCCACAATCTGGTGGTCGTGGTGGTTGGAGAGG
ATTTGGATTATGGAGATAAAATCCTTTCAACAATTGTATTGCATCCTCTTTTTTTATTTT
TATTTATTTTTTCCAAAAAACATCGAAATAATCTTTTGTAAATAAAAAAAAAAAAAAAAA
AAAAACTGGTGCTTTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAA----------