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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK230
Library SS
(Link to library)
Clone ID SSK230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16247-1
Original site URL
Representative seq. ID SSK230E
(Link to Original site)
Representative DNA sequence 
>SSK230 (SSK230Q) /CSM/SS/SSK2-B/SSK230Q.Seq.d/
GCTCAAGCTAAAGTCTTTGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGACAAA
TGTATTACACGTGAAGAACTTAGAGAATATGCCATTGAATATTATGAAATTTATCCAACT
GAATAATTATTTCCATAAAAATAATCTCAATTTAAGTCAGTCTTGAAAAAATAAATAAAA
AAATAAAAACTTTATTTAATTTTAAAAAAA
sequence update 1998. 2.12
Translated Amino Acid sequence 
LKLKSLPTQCLKMWILMMTNVLHVKNLENMPLNIMKFIQLNNYFHKNNLNLSQS*knk*k
nknfi*f*k
Translated Amino Acid sequence (All Frames) 
Frame A:
aqakvfansmfedvdsdddkcitreelreyaieyyeiypte*lfp*k*sqfksvlkk*ik
k*klylilkk


Frame B:
LKLKSLPTQCLKMWILMMTNVLHVKNLENMPLNIMKFIQLNNYFHKNNLNLSQS*knk*k
nknfi*f*k


Frame C:
ss*slcqlnv*rcgf***qmyyt*rt*rich*il*nlsn*iiisikiisi*vslekinkk
iktlfnfkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM568 (SSM568Q) /CSM/SS/SSM5-C/SSM568Q.Seq.d/                        327   4e-89
SSL744 (SSL744Q) /CSM/SS/SSL7-B/SSL744Q.Seq.d/                        327   4e-89
SSL694 (SSL694Q) /CSM/SS/SSL6-D/SSL694Q.Seq.d/                        327   4e-89
SSL660 (SSL660Q) /CSM/SS/SSL6-C/SSL660Q.Seq.d/                        327   4e-89
SSK828 (SSK828Q) /CSM/SS/SSK8-B/SSK828Q.Seq.d/                        327   4e-89
SSK762 (SSK762Q) /CSM/SS/SSK7-C/SSK762Q.Seq.d/                        327   4e-89
SSK659 (SSK659Q) /CSM/SS/SSK6-C/SSK659Q.Seq.d/                        327   4e-89
SSK380 (SSK380Q) /CSM/SS/SSK3-D/SSK380Q.Seq.d/                        327   4e-89
SSK230 (SSK230Q) /CSM/SS/SSK2-B/SSK230Q.Seq.d/                        327   4e-89
SSJ879 (SSJ879Q) /CSM/SS/SSJ8-D/SSJ879Q.Seq.d/                        327   4e-89
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ297597|AJ297597.1 Dictyostelium discoideum mRNA for calcium-binding protein 4a (cbpD1  gene).   319   8e-84  1
AJ297598|AJ297598.1 Dictyostelium discoideum cbpD2 gene for calcium-binding protein 4b,  exons 1-4.   165   5e-51  2
CC552658|CC552658.1 CH240_438B9.T7 CHORI-240 Bos taurus genomic clone CH240_438B9, genomic survey sequence.    46   0.19   1
AC079574|AC079574.1 Mus musculus clone RP23-84J17, WORKING DRAFT SEQUENCE, 27 unordered pieces.    36   0.55   3
AC095694|AC095694.6 Rattus norvegicus clone CH230-9D5, WORKING DRAFT SEQUENCE, 4 unordered pieces.    44   0.73   1
AC120378|AC120378.3 Mus musculus clone RP24-263N3, WORKING DRAFT SEQUENCE, 5 unordered pieces.    44   0.73   1
CL202254|CL202254.1 ZMMBBb0563L10r ZMMBBb (HindIII) Zea mays subsp. mays genomic clone ZMMBBb0563L10 3', genomic survey sequence.    44   0.73   1
AC139045|AC139045.7 Mus musculus chromosome 7, clone RP23-466H15, complete sequence.    44   0.73   1
AC121452|AC121452.4 Rattus norvegicus clone CH230-131P14, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    44   0.73   1
AC112006|AC112006.4 Rattus norvegicus clone CH230-235F10, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces.    44   0.73   1
dna update 2004. 2.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     87   1e-16
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    85   7e-16
protein update 2009. 3. 7
PSORT 

 psg: 0.72  gvh: 0.31  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSK230 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK230E
Full length Seq. 
>SSK230E.Seq
GCTCAAGCTAAAGTCTTTGCCAACTCAATGTTTGAAGATGTGGATTCTGATGATGACAAA
TGTATTACACGTGAAGAACTTAGAGAATATGCCATTGAATATTATGAAATTTATCCAACT
GAATAATTATTTCCATAAAAATAATCTCAATTTAAGTCAGTCTTGAAAAAATAAATAAAA
AAATAAAAACTTTATTTAATTTTAAAAAAA
Length of full length seq. 210