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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK216
Library SS
(Link to library)
Clone ID SSK216
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16278-1
Original site URL
Representative seq. ID SSK216Z
(Link to Original site)
Representative DNA sequence 
>SSK216 (SSK216Q) /CSM/SS/SSK2-A/SSK216Q.Seq.d/
XXXXXXXXXXAAAAGATATGAGAATTTTAATGGTCGGTTTAGATGCTGCTGGTAAAACCA
CCATTTTATACAAACTTAAATTAGGTGAAATTGTTACTACAATTCCAACCATTGGTTTCA
ATGTCGAAACTGTCGAATTCAAAAACATTAACTTCACTGTATGGGATGTTGGTGGTCAAG
ATAAAATTCGTCCATTATGGAGACATTATTTCCAAAATACTCAAGGTCTTATCTTTGTTG
TTGATTCAAACGATAGAGAAAGAATTCAAGAAGCTTGTGATGAACTCACTAAAATGCTCA
ATGAAGATGAATTACGTGATGCTGTTTTATTAGTTTTCTGTAACAAACAAGATCTTCCAA
ATGCCATGAGTGTCGCTGAAGTTACCGATAAATTAAATCTCCACTCTCTCCGTTCAAGAA
AATGGTACATACAGTCAACTTGTGCCACCAGTGGTGATGGTTTATATGAAGGTTTAGACT
GGCTCTCAAATACCTTAACAAGCTCCTCAAAATAAATGACGTAGGAGGTCAATTTAATAG
AGTTTATTAGATTTTTTAATTATTTAATAATCTAATTAAACTACTGTTGTTTAATTTTGA
AATAAAAAAAAAAAAAACCTTNTTTATATAAATAATAATAAATAAAATAATAATAATAAT
AAAAA
sequence update 1998. 2.12
Translated Amino Acid sequence 
---KDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQD
KIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPN
AMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK*mt*evnlie
firffnylii*lnycclilk*kkkkpxlyk***ik*****k
Translated Amino Acid sequence (All Frames) 
Frame A:
---KDMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEFKNINFTVWDVGGQD
KIRPLWRHYFQNTQGLIFVVDSNDRERIQEACDELTKMLNEDELRDAVLLVFCNKQDLPN
AMSVAEVTDKLNLHSLRSRKWYIQSTCATSGDGLYEGLDWLSNTLTSSSK*mt*evnlie
firffnylii*lnycclilk*kkkkpxlyk***ik*****k


Frame B:
---ki*ef*wsv*mllvkppfytnln*vklllqfqplvsmsklsnsktltslygmlvvki
kfvhygdiiskilkvlsllliqtiekefkklvmnslkcsmkmnyvmlfy*fsvtnkifqm
p*vslklpin*istlsvqengtysqlvppvvmvymkv*tgsqip*qapqnk*rrrsi**s
lldflii**sn*ttvv*f*nkkkknlxyinnnk*nnnnnk


Frame C:
---ryenfngrfrccw*nhhfiqt*ir*ncyynsnhwfqcrncriqkh*lhcmgcwwsr*
nssimetlfpkysrsylcc*fkr*rknsrsl**th*naq*r*it*ccfisfl*qtrsskc
hecr*syr*iksplspfkkmvhtvnlchqw*wfi*rfrlalkylnkllkindvggqfnrv
y*if*lfnnliklllfnfeikkkktxfi*iiinkiiiiik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL154 (SSL154Q) /CSM/SS/SSL1-C/SSL154Q.Seq.d/                       1176   0.0
SSL113 (SSL113Q) /CSM/SS/SSL1-A/SSL113Q.Seq.d/                       1176   0.0
SSK216 (SSK216Q) /CSM/SS/SSK2-A/SSK216Q.Seq.d/                       1176   0.0
SSI674 (SSI674Q) /CSM/SS/SSI6-D/SSI674Q.Seq.d/                       1176   0.0
SSI502 (SSI502Q) /CSM/SS/SSI5-A/SSI502Q.Seq.d/                       1176   0.0
SSG749 (SSG749Q) /CSM/SS/SSG7-C/SSG749Q.Seq.d/                       1176   0.0
SSF795 (SSF795Q) /CSM/SS/SSF7-D/SSF795Q.Seq.d/                       1176   0.0
SSC884 (SSC884Q) /CSM/SS/SSC8-D/SSC884Q.Seq.d/                       1176   0.0
SSC436 (SSC436Q) /CSM/SS/SSC4-B/SSC436Q.Seq.d/                       1176   0.0
SSC323 (SSC323Q) /CSM/SS/SSC3-A/SSC323Q.Seq.d/                       1176   0.0
own update 2004. 8.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ000063|AJ000063.1 Dictyostelium discoideum mRNA for ADP-ribosylation factor 1.  1176   0.0    1
BX550028|BX550028.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse110e05_q1c.   222   2e-58  2
CK150930|CK150930.1 CsmgEST02373 Culicoides sonorensis female serum-fed midgut cDNA Library Culicoides sonorensis cDNA, mRNA sequence.   198   6e-57  3
AI187662|AI187662.1 EST485 Manduca sexta male antennae Uni-ZAP XR library Manduca sexta cDNA clone pMsmaD225 5' similar to ADP-ribosylation factor 1, mRNA sequence.   214   1e-51  1
CD524199|CD524199.1 ku97c01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   194   4e-50  2
BG225964|BG225964.1 kp44b08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:M36341 ADP-RIBOSYLATION FACTOR 4 (HUMAN);, mRNA sequence.   174   1e-49  3
BI073736|BI073736.1 kt34c04.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:ARF1_CAEEL Q10943 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   194   6e-49  2
CA302382|CA302382.1 taa14c04.y1 Hydra cDNA library Hydra magnipapillata cDNA 5' similar to SW:ARF2_MOUSE P16500 ADP-RIBOSYLATION FACTOR 2. ;, mRNA sequence.   161   1e-47  3
AB001051|AB001051.1 Dugesia japonica mRNA for ADP-ribosylation factor, complete cds.   170   2e-47  4
CD525279|CD525279.1 kw14d01.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:ARF1_DROME P35676 ADP-RIBOSYLATION FACTOR 1. [1] ;, mRNA sequence.   178   2e-45  2
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O00909) RecName: Full=ADP-ribosylation factor 1;  &AJ000063_1(A...   340   3e-92
(P91924) RecName: Full=ADP-ribosylation factor;  &AB001051_1(AB0...   301   9e-81
AC135465_4(AC135465|pid:none) Medicago truncatula clone mth2-24h...   300   3e-80
(Q06396) RecName: Full=ADP-ribosylation factor 1; AltName: Full=...   300   3e-80
AP003570_13(AP003570|pid:none) Oryza sativa Japonica Group genom...   300   3e-80
(P51821) RecName: Full=ADP-ribosylation factor 1;  &S66337(S6633...   300   3e-80
BT065309_1(BT065309|pid:none) Zea mays full-length cDNA clone ZM...   300   3e-80
(O48649) RecName: Full=ADP-ribosylation factor 1;  &AB003377_1(A...   299   4e-80
AK226308_1(AK226308|pid:none) Arabidopsis thaliana mRNA for simi...   299   6e-80
EF144975_1(EF144975|pid:none) Populus trichocarpa clone WS0111_E...   299   6e-80
protein update 2009. 6.14
PSORT 

 psg: 0.79  gvh: 0.36  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 24.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSK216 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSK216Z
3' end seq. 
>SSK216Z.Seq
----------AAAAGATATGAGAATTTTAATGGTCGGTTTAGATGCTGCTGGTAAAACCA
CCATTTTATACAAACTTAAATTAGGTGAAATTGTTACTACAATTCCAACCATTGGTTTCA
ATGTCGAAACTGTCGAATTCAAAAACATTAACTTCACTGTATGGGATGTTGGTGGTCAAG
ATAAAATTCGTCCATTATGGAGACATTATTTCCAAAATACTCAAGGTCTTATCTTTGTTG
TTGATTCAAACGATAGAGAAAGAATTCAAGAAGCTTGTGATGAACTCACTAAAATGCTCA
ATGAAGATGAATTACGTGATGCTGTTTTATTAGTTTTCTGTAACAAACAAGATCTTCCAA
ATGCCATGAGTGTCGCTGAAGTTACCGATAAATTAAATCTCCACTCTCTCCGTTCAAGAA
AATGGTACATACAGTCAACTTGTGCCACCAGTGGTGATGGTTTATATGAAGGTTTAGACT
GGCTCTCAAATACCTTAACAAGCTCCTCAAAATAAATGACGTAGGAGGTCAATTTAATAG
AGTTTATTAGATTTTTTAATTATTTAATAATCTAATTAAACTACTGTTGTTTAATTTTGA
AATAAAAAAAAAAAAAACCTTNTTTATATAAATAATAATAAATAAAATAATAATAATAAT
AAAAA
Length of 3' end seq. 655
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -