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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK204
Library SS
(Link to library)
Clone ID SSK204
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01649-1
Original site URL
Representative seq. ID SSK204E
(Link to Original site)
Representative DNA sequence 
>SSK204 (SSK204Q) /CSM/SS/SSK2-A/SSK204Q.Seq.d/
GAAATTTGATGATGATTTACCAGAAAGACAATTTGATAATTTCCAATTTGTACCATTCCA
CACAACAATGGCAAAAGCTGAAAATAGAGAAGTTGATTTTGCAGTTGCCGCTCTTCAAGA
AATTCCTGAGCAATTCCAATATATCAAACAACTTGGTTTACTTTAAAAGAAAAAGAGTTT
TTTTCAAAATTTTTTTTTTTATACTTTTTTTTTTTTTCCATTTTTATTTCCCTTTTTTTT
TTTCTTCACAATAATTTATTCATTATAGTTCAAATCAAATTTACAAAATTTATAATTTAT
CAATCTGATAATTAAAAAAAAAAATAAAAAAAAAAATAAAAAAGTGTACTTTAGAACAAA
sequence update 1998. 2.12
Translated Amino Acid sequence 
NLMMIYQKDNLIISNLYHSTQQWQKLKIEKLILQLPLFKKFLSNSNISNNLVYFKRKRVF
FKIFFFILFFFFHFYFPFFFSSQ*fihyssnqiykiynlsi**lkkkikkkikkctleq
Translated Amino Acid sequence (All Frames) 
Frame A:
ei***ftrkti**fpictiphnngks*k*rs*fcscrssrns*aipiyqttwftlkekef
fskffflyffffsifislffflhnnlfiivqikftkfiiyqsdn*kkk*kkk*ksvl*nk


Frame B:
kfdddlperqfdnfqfvpfhttmakaenrevdfavaalqeipeqfqyikqlgll*kkksf
fqnfffytffffpflfpffffftiiysl*fksnlqnl*finliikkknkkknkkvyfrt


Frame C:
NLMMIYQKDNLIISNLYHSTQQWQKLKIEKLILQLPLFKKFLSNSNISNNLVYFKRKRVF
FKIFFFILFFFFHFYFPFFFSSQ*fihyssnqiykiynlsi**lkkkikkkikkctleq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL339 (SSL339Q) /CSM/SS/SSL3-B/SSL339Q.Seq.d/                        351   5e-96
SSK204 (SSK204Q) /CSM/SS/SSK2-A/SSK204Q.Seq.d/                        351   5e-96
SSD693 (SSD693Q) /CSM/SS/SSD6-D/SSD693Q.Seq.d/                        303   1e-81
VHJ533 (VHJ533Q) /CSM/VH/VHJ5-B/VHJ533Q.Seq.d/                         36   0.35
VFO828 (VFO828Q) /CSM/VF/VFO8-B/VFO828Q.Seq.d/                         36   0.35
VFO718 (VFO718Q) /CSM/VF/VFO7-A/VFO718Q.Seq.d/                         36   0.35
VFO440 (VFO440Q) /CSM/VF/VFO4-B/VFO440Q.Seq.d/                         36   0.35
VFO439 (VFO439Q) /CSM/VF/VFO4-B/VFO439Q.Seq.d/                         36   0.35
VFO416 (VFO416Q) /CSM/VF/VFO4-A/VFO416Q.Seq.d/                         36   0.35
VFO346 (VFO346Q) /CSM/VF/VFO3-B/VFO346Q.Seq.d/                         36   0.35
own update 2003.10.30
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.   351   e-126  5
AP001118|AP001118.1 Buchnera aphidicola str. APS (Acyrthosiphon pisum) genomic DNA, complete sequence, segment 1/2.    34   0.001  8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    34   0.003  11
AC129474|AC129474.1 Homo sapiens chromosome 15 clone RP11-94M10 map 15, LOW-PASS SEQUENCE SAMPLING.    40   0.015  2
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             34   0.048  10
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     34   0.048  10
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2.    36   0.048  7
AL110485|AL110485.4 Caenorhabditis elegans YAC Y46G5A.             36   0.073  7
AL023828|AL023828.1 Caenorhabditis elegans YAC Y17G7B.             36   0.076  6
AC013372|AC013372.6 Homo sapiens clone RP11-12E16, WORKING DRAFT SEQUENCE, 1 ordered pieces.    38   0.099  4
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC115607_18(AC115607|pid:none) Dictyostelium discoideum chromoso...   112   3e-24
T29043(T29043)hypothetical protein B0228.2 - Caenorhabditis eleg...    68   1e-10
(Q09221) RecName: Full=Putative protein tag-308;  &U23168_1(U231...    68   1e-10
U23168_5(U23168|pid:none) Caenorhabditis elegans cosmid B0228, c...    68   1e-10
FJ032633_4(FJ032633|pid:none) Oryza alta clone a0036L17 charged ...    57   2e-07
AF466200_15(AF466200|pid:none) Sorghum bicolor putative protein ...    57   2e-07
AY087355_1(AY087355|pid:none) Arabidopsis thaliana clone 34552 m...    57   3e-07
AC008113_7(AC008113|pid:none) Genomic sequence for Arabidopsis t...    57   3e-07
AP004279_15(AP004279|pid:none) Oryza sativa Japonica Group genom...    56   3e-07
AK067750_1(AK067750|pid:none) Oryza sativa Japonica Group cDNA c...    56   3e-07
protein update 2009. 7. 8
PSORT 

 psg: 0.79  gvh: 0.43  alm: 0.26  top: 0.23  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: cytoplasmic
	 24.0 %: endoplasmic reticulum
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSK204 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSK204E
Full length Seq. 
>SSK204E.Seq
GAAATTTGATGATGATTTACCAGAAAGACAATTTGATAATTTCCAATTTGTACCATTCCA
CACAACAATGGCAAAAGCTGAAAATAGAGAAGTTGATTTTGCAGTTGCCGCTCTTCAAGA
AATTCCTGAGCAATTCCAATATATCAAACAACTTGGTTTACTTTAAAAGAAAAAGAGTTT
TTTTCAAAATTTTTTTTTTTATACTTTTTTTTTTTTTCCATTTTTATTTCCCTTTTTTTT
TTTCTTCACAATAATTTATTCATTATAGTTCAAATCAAATTTACAAAATTTATAATTTAT
CAATCTGATAATTAAAAAAAAAAATAAAAAAAAAAATAAAAAAGTGTACTTTAGAACAAA
Length of full length seq. 360