SSK190
Library SS
(Link to library)
Clone ID SSK190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05027-1
Original site URL
Representative seq. ID SSK190F
(Link to Original site)
Representative DNA sequence
>SSK190 (SSK190Q) /CSM/SS/SSK1-D/SSK190Q.Seq.d/
TTTTTAAAAAAGTATAAATAAATTTTATTTTATTTTTTATTTTTATTTCTTCTAAAAATT
CTATTTGTTTTGTTTTTTGTATTTTATTTTATTTTATTTTACTATTCAATATTCATAAAT
AAATTTAAAACACTTTTTAAGAAACCAACGATTTCACCACTATCTAAATTACTGACACCA
AAGATACGATCAACAAAAGTGATTGGGACCTCACCAACTTGATAACCTAATTGATTTGCT
CTAACCATCATTTCAACTTGGAATACATAACCTTTTGATTTATTTTGAGTGATTAATTTC
TCTAAAACGTCTTTTCTATAGAGACGGAATGAACCTGTTAAATCGGATACACCAGGTGTT
AATAAAACTGATGCAATGTAATTTGCAACACGTGATGTTAACTTTCTATATAAATTCCAG
CCAAATACACCACCACCACTTTGATAACGTGTACCAGTTACAATTTCACAATTGAGTTTC
TTTTGTTTCTCAATGAATTGTGGAATGAATTTTGGATGATGTGAAAGATCTGCGTCCATT
AAAATCACCCAATTACCTGTTGATTTCTTTATACCATCCATATGCACTACCTAATCCCAT
CTTACCTGGTCTTGATAAAATTTTTATCTTTTCTTCTCCATAAATCTTTTGTAATTGTTG
TGCAACTTCTAATGTACCATCTGGTGAATTATCTTCAACAATAACAACTTCXXXXXXXXX
X
sequence update 1998.11.17
Translated Amino Acid sequence
flkkyk*ILFYFLFLFLLKILFVLFFVFYFILFYYSIFINKFKTLFKKPTISPLSKLLTP
KIRSTKVIGTSPT**pn*faltiistwnt*pfdlf*vinfsktsfl*rrnepvksdtpgv
nktdam*fatrdvnflykfqpntpppl**rvpvtisqlsffcfsmncgmnfg*cersasi
kitqlpvdffipsictt*shltws**nfylffsinll*llcnf*ctiw*iifnnnn---


Translated Amino Acid sequence (All Frames)
Frame A:
flkkyk*ILFYFLFLFLLKILFVLFFVFYFILFYYSIFINKFKTLFKKPTISPLSKLLTP
KIRSTKVIGTSPT**pn*faltiistwnt*pfdlf*vinfsktsfl*rrnepvksdtpgv
nktdam*fatrdvnflykfqpntpppl**rvpvtisqlsffcfsmncgmnfg*cersasi
kitqlpvdffipsictt*shltws**nfylffsinll*llcnf*ctiw*iifnnnn---


Frame B:
f*ksinkfyfifyfyff*kfylfcflyfilfyftiqys*inlkhflrnqrfhhylny*hq
rydqqk*lgphqldnlidll*psfqlgihnlliyfe*lislkrlfyrdgmnllnrihqvl
iklmqcnlqhvmltfyinssqihhhhfdnvyqlqfhn*vsfvsq*ive*ilddvkdlrpl
kspnyllislyhpyalpnpilpgldkififssp*ifcnccatsnvpsgelsstitt---


Frame C:
fkkv*infilffifissknsicfvfcilfyfillfnihk*i*ntf*etndftti*itdtk
dtinksdwdltnlit*licsnhhfnleyitf*filsd*fl*nvfsiete*tc*igytrc*
*n*cnvicnt*c*lsi*ipakyttttlitctsynftiefllflnelwnefwmm*kicvh*
nhpitc*flytihmhylipsylvlikflsfllhksfvivvqllmyhlvnylqq*ql---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK190 (SSK190Q) /CSM/SS/SSK1-D/SSK190Q.Seq.d/ 1211 0.0
SSE607 (SSE607Q) /CSM/SS/SSE6-A/SSE607Q.Seq.d/ 959 0.0
VSC445 (VSC445Q) /CSM/VS/VSC4-B/VSC445Q.Seq.d/ 755 0.0
VFM707 (VFM707Q) /CSM/VF/VFM7-A/VFM707Q.Seq.d/ 38 0.18
VFM319 (VFM319Q) /CSM/VF/VFM3-A/VFM319Q.Seq.d/ 38 0.18
VFJ282 (VFJ282Q) /CSM/VF/VFJ2-D/VFJ282Q.Seq.d/ 38 0.18
VFC492 (VFC492Q) /CSM/VF/VFC4-D/VFC492Q.Seq.d/ 38 0.18
VSJ501 (VSJ501Q) /CSM/VS/VSJ5-A/VSJ501Q.Seq.d/ 36 0.71
VSA326 (VSA326Q) /CSM/VS/VSA3-B/VSA326Q.Seq.d/ 36 0.71
VHJ276 (VHJ276Q) /CSM/VH/VHJ2-D/VHJ276Q.Seq.d/ 36 0.71

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF125462|AF125462.1 Caenorhabditis elegans cosmid Y66H1A, complete sequence. 68 4e-14 5
BT005875|BT005875.1 Arabidopsis thaliana At1g20575 gene, complete cds. 48 5e-14 4
BX818531|BX818531.1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL84ZB03 of Silique of strain col-0 of Arabidopsis thaliana (thale cress). 48 1e-13 4
AY085986|AY085986.1 Arabidopsis thaliana clone 20443 mRNA, complete sequence. 48 1e-13 4
C13195|C13195.1 C.elegans cDNA clone yk165d8 : 5' end, single read. 68 5e-13 2
CK582626|CK582626.1 IST_WI5_41429 AD-wrmcDNA library Caenorhabditis elegans cDNA 5' similar to Y66H1A.2, mRNA sequence. 68 7e-13 2
CB394862|CB394862.1 OSTR145F11_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence. 68 8e-13 2
CB391040|CB391040.1 OSTF145F11_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence. 68 8e-13 2
AX489192|AX489192.1 Sequence 6492 from Patent WO02053728. 60 4e-12 2
BU636630|BU636630.1 009C04 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA sequence. 48 2e-11 3
dna update 2004. 2.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54LP3) RecName: Full=Dolichol-phosphate mannosyltransferase; ... 320 e-106
BC077113_1(BC077113|pid:none) Danio rerio dolichyl-phosphate man... 219 1e-67
BC088776_1(BC088776|pid:none) Xenopus tropicalis dolichyl-phosph... 211 2e-66
BC097635_1(BC097635|pid:none) Xenopus laevis hypothetical protei... 211 2e-66
BC068840_1(BC068840|pid:none) Xenopus laevis hypothetical protei... 210 4e-66
BT075095_1(BT075095|pid:none) Osmerus mordax clone omor-eva-507-... 209 4e-66
(Q9WU83) RecName: Full=Dolichol-phosphate mannosyltransferase; ... 215 8e-66
(Q1JQ93) RecName: Full=Dolichol-phosphate mannosyltransferase; ... 216 1e-65
BC008466_1(BC008466|pid:none) Homo sapiens dolichyl-phosphate ma... 213 5e-65
(O70152) RecName: Full=Dolichol-phosphate mannosyltransferase; ... 214 8e-65
protein update 2009. 6.14
PSORT

psg: 0.99 gvh: 0.53 alm: 0.13 top: 0.67 tms: 0.07 mit: 0.49 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.16 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

44.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: Golgi
8.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSK190 is nuc

5' end seq. ID SSK190F
5' end seq.
>SSK190F.Seq
TTTTTAAAAAAGTATAAATAAATTTTATTTTATTTTTTATTTTTATTTCTTCTAAAAATT
CTATTTGTTTTGTTTTTTGTATTTTATTTTATTTTATTTTACTATTCAATATTCATAAAT
AAATTTAAAACACTTTTTAAGAAACCAACGATTTCACCACTATCTAAATTACTGACACCA
AAGATACGATCAACAAAAGTGATTGGGACCTCACCAACTTGATAACCTAATTGATTTGCT
CTAACCATCATTTCAACTTGGAATACATAACCTTTTGATTTATTTTGAGTGATTAATTTC
TCTAAAACGTCTTTTCTATAGAGACGGAATGAACCTGTTAAATCGGATACACCAGGTGTT
AATAAAACTGATGCAATGTAATTTGCAACACGTGATGTTAACTTTCTATATAAATTCCAG
CCAAATACACCACCACCACTTTGATAACGTGTACCAGTTACAATTTCACAATTGAGTTTC
TTTTGTTTCTCAATGAATTGTGGAATGAATTTTGGATGATGTGAAAGATCTGCGTCCATT
AAAATCACCCAATTACCTGTTGATTTCTTTATACCATCCATATGCACTACCTAATCCCAT
CTTACCTGGTCTTGATAAAATTTTTATCTTTTCTTCTCCATAAATCTTTTGTAATTGTTG
TGCAACTTCTAATGTACCATCTGGTGAATTATCTTCAACAATAACAACTTC---------
-
Length of 5' end seq. 711
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -