NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK169
Library SS
(Link to library)
Clone ID SSK169
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15932-1
Original site URL
Representative seq. ID SSK169Z
(Link to Original site)
Representative DNA sequence 
>SSK169 (SSK169Q) /CSM/SS/SSK1-C/SSK169Q.Seq.d/
XXXXXXXXXXACAAAAAGATGTTGTTCAACGTTTACCAGATAGCGATTCTGAAGATGAAT
TATTAAAACAAGAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGG
ATGAACCAAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCAC
CATTTTCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAA
TTTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATA
ACAACACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAG
AACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGTTGAATTAT
CAGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGG
GTTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATG
AAATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTT
TCTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTAT
AAAATCAAAAAAAAAAAAAAA
sequence update 1998. 2. 6
Translated Amino Acid sequence 
---QKDVVQRLPDSDSEDELLKQEQEKLEEEEEEEEEEKDEPKIEEEADSFCFLPFTPSP
FSPFSIQNNVPASVQVPSEISNSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQE
QIIENVQPQVEELPKLVELSVNGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINE
IIDHLLSNQEQ*krs*kiffffflfsflflkink*nfil*nqkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---QKDVVQRLPDSDSEDELLKQEQEKLEEEEEEEEEEKDEPKIEEEADSFCFLPFTPSP
FSPFSIQNNVPASVQVPSEISNSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQE
QIIENVQPQVEELPKLVELSVNGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINE
IIDHLLSNQEQ*krs*kiffffflfsflflkink*nfil*nqkkkk


Frame B:
---kkmlfnvyqiailkmny*nknkkn*kkrkrkkkrkrmnqklkkkpivfvsyhslhhh
fhhfqfkimyqhqfkfhqkfqihsifhqllnnnnkkk*ittqviiqiiinyhhyq*lnkn
kllkmfnhklknyqnllnyq*mvnkkildvnvlvhwfqwvsvilqillklskdiisismk
sltiy*viknnkkdlrksfsfffclvsff*klinkilyykikkkkk


Frame C:
---krccstftr*rf*r*iiktrtrkirrrgrgrrrgkg*tkn*rrsr*flfltihsiti
ftifnsk*ctsissssirnfkfiqystsc*ttttrknk*qhk**fk*lsittitss*trt
ny*kcstts*ritktc*iiskw*trry*t*mywyigfngfq*yskyy*nyqki*fqyq*n
h*pfik*srtikkilenlflfffv*fpffkn**ikfyiikskkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK169 (SSK169Q) /CSM/SS/SSK1-C/SSK169Q.Seq.d/                        946   0.0
SSM404 (SSM404Q) /CSM/SS/SSM4-A/SSM404Q.Seq.d/                        930   0.0
SSM351 (SSM351Q) /CSM/SS/SSM3-C/SSM351Q.Seq.d/                        930   0.0
SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/                        930   0.0
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/                        930   0.0
SSE569 (SSE569Q) /CSM/SS/SSE5-C/SSE569Q.Seq.d/                        930   0.0
SLA424 (SLA424Q) /CSM/SL/SLA4-A/SLA424Q.Seq.d/                        930   0.0
SSD283 (SSD283Q) /CSM/SS/SSD2-D/SSD283Q.Seq.d/                        924   0.0
SSA184 (SSA184Q) /CSM/SS/SSA1-D/SSA184Q.Seq.d/                        922   0.0
SSM280 (SSM280Q) /CSM/SS/SSM2-D/SSM280Q.Seq.d/                        916   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36   1e-11  14
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    46   2e-08  13
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   8e-08  21
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36   2e-07  15
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    46   3e-07  15
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   5e-06  11
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence.    36   5e-06  12
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    42   1e-05  15
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    36   2e-05  10
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38   3e-05  14
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU633900_565(CU633900|pid:none) Podospora anserina genomic DNA c...    35   1.6
CP001407_4621(CP001407|pid:none) Bacillus cereus 03BB102, comple...    34   4.6
CP001349_1344(CP001349|pid:none) Methylobacterium nodulans ORS 2...    33   6.0
EU016667_18(EU016667|pid:none) Uncultured marine microorganism H...    33   7.9
protein update 2009. 6.14
PSORT 

 psg: 0.46  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vesicles of secretory system

>> prediction for SSK169 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSK169Z
3' end seq. 
>SSK169Z.Seq
----------ACAAAAAGATGTTGTTCAACGTTTACCAGATAGCGATTCTGAAGATGAAT
TATTAAAACAAGAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGG
ATGAACCAAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCAC
CATTTTCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAA
TTTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATA
ACAACACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAG
AACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGTTGAATTAT
CAGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGG
GTTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATG
AAATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTT
TCTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTAT
AAAATCAAAAAAAAAAAAAAA
Length of 3' end seq. 671
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -