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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK168
Library SS
(Link to library)
Clone ID SSK168
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U11489-1
Original site URL
Representative seq. ID SSK168P
(Link to Original site)
Representative DNA sequence 
>SSK168 (SSK168Q) /CSM/SS/SSK1-C/SSK168Q.Seq.d/
ANTTCATATCAATTTTTTGANAATTATTTTTATTATTATTTATTATTAGCAATTAATATT
AATATTTTAATTTTGAAAATTAAATTTTAATTTTAATTTTTAAAAAAAAAAAAAAAAAAA
CTAAAAAAAAAAAAAGAGAAACAAACAATTATTATTTTTATCACATCAAAAATCATAAAT
CAAAAATAGATAATTAATACCTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAXXXXXXXXXXAAAACCATTAAAATTAAGATTAGTTATTGGTGATCAAA
ATGAATTAAGAAGATTAAACCAAATTGAATTTAATGATGTTTTTTTAATTTGTTTTTCAG
TTGATTCAAAGGCATCATATGATAATATTGAAAAATGGAATACAGAAATTAGAAAAATCC
TGCCAACTCCAAATATAATATTAGTTGGTACAAAGATTGATTTAAGAAAAGAAGGTGGAG
AACTTAAAAAATCAATTGTGACACAAGAAATGGGAATTGAAAAAGCAAAAGAAATAAATG
CAATAAAATATATGGAGTGTTCAACAGCAACCTACGAAGGAGTTAAAGAAGTTTTCGACG
AAAGTATAAATATCTACATGACAAAAAAGCTTTATATCCAAGATTTAAGAAAAAAAAGTT
TTTTAATTCCAAAGAAAAATACAAACAAAAAATCCTGTAAAANNTAATAATAATAATAAT
AATAATAATAATAATAAAAAATAATTAATAGTAGAAATATAAATAGTTATCAGTTTTTCC
AAAATATGCGCATATTTTTTTTTAAATAAATAAACCCCNTTTTTTTGTAAATAAATATAA
sequence update 1998.11.17
Translated Amino Acid sequence 
xsyqffxnyfyyylllaininililkikf*f*flkkkkkklkkkkekqtiiifitskiin
qk*IINTYIKKKKKKKKKKKKKKK---

---KPLKLRLVIGDQNELRRLNQIEFNDVFLICFSVDSKASYDNIEKWNTEIRKILPTPN
IILVGTKIDLRKEGGELKKSIVTQEMGIEKAKEINAIKYMECSTATYEGVKEVFDESINI
YMTKKLYIQDLRKKSFLIPKKNTNKKSCKX***********kiinsrninsyqffqnmri
fffk*inpxfl*ini
Translated Amino Acid sequence (All Frames) 
Frame A:
xsyqffxnyfyyylllaininililkikf*f*flkkkkkklkkkkekqtiiifitskiin
qk*IINTYIKKKKKKKKKKKKKKK---

---ktikikisyw*sk*ikkikpn*i**cffnlffs*fkgii**y*kmeyrn*knpansk
yniswykd*fkkrrwrt*kincdtrngn*kskrnkcnkiygvfnsnlrrs*rsfrrkyky
lhdkkalyprfkkkkffnskekykqkil*xxiiiiiiiiiiknn***kyk*lsvfpkyah
iff*inkpxffvnky

Frame B:
xhinflxiifiiiyy*qlilif*f*klnfnfnf*kkkkkn*kkkkrnkqllflshqks*i
knr*lipilkkkkkkkkkkkkkk---

---KPLKLRLVIGDQNELRRLNQIEFNDVFLICFSVDSKASYDNIEKWNTEIRKILPTPN
IILVGTKIDLRKEGGELKKSIVTQEMGIEKAKEINAIKYMECSTATYEGVKEVFDESINI
YMTKKLYIQDLRKKSFLIPKKNTNKKSCKX***********kiinsrninsyqffqnmri
fffk*inpxfl*ini

Frame C:
fisif*xlflllfiisn*y*yfnfen*ililifkkkkkktkkkkretnnyyfyhiknhks
kidn*yly*kkkkkkkkkkkkkk---

---nh*n*d*llvikmn*ed*tklnlmmff*fvfqliqrhhmiilkngiqklekscqlqi
*y*lvqrli*ekkvenlknql*hkkwelkkqkk*mq*niwsvqqqptkelkkfstkv*is
t*qksfiski*ekkvf*fqrkiqtknpvkxnnnnnnnnnnkk*livei*ivisfskicay
fflnk*tpffck*i*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK168 (SSK168Q) /CSM/SS/SSK1-C/SSK168Q.Seq.d/                        726   0.0
SSK745 (SSK745Q) /CSM/SS/SSK7-B/SSK745Q.Seq.d/                        710   0.0
SSJ426 (SSJ426Q) /CSM/SS/SSJ4-B/SSJ426Q.Seq.d/                        710   0.0
AHN305 (AHN305Q) /CSM/AH/AHN3-A/AHN305Q.Seq.d/                        710   0.0
SSH858 (SSH858Q) /CSM/SS/SSH8-C/SSH858Q.Seq.d/                        611   e-174
SSF838 (SSF838Q) /CSM/SS/SSF8-B/SSF838Q.Seq.d/                        141   2e-32
SSA838 (SSA838Q) /CSM/SS/SSA8-B/SSA838Q.Seq.d/                        125   1e-27
VSF553 (VSF553Q) /CSM/VS/VSF5-C/VSF553Q.Seq.d/                         44   0.003
SSK792 (SSK792Q) /CSM/SS/SSK7-D/SSK792Q.Seq.d/                         44   0.003
SSG550 (SSG550Q) /CSM/SS/SSG5-C/SSG550Q.Seq.d/                         44   0.003
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF310896|AF310896.1 Dictyostelium discoideum RacJ (racJ) gene, complete cds; LagC-like protein (lagC3) gene, partial cds; and unknown genes.   601   0.0    7
AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene, complete cds.    50   7e-07  3
L11591|L11591.1 Slime mold RacA protein mRNA, partial cds.         50   2e-06  2
AE014830|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence.    34   2e-04  16
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   3e-04  13
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   7e-04  25
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   0.001  21
AF037042|AF037042.2 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene, complete cds; tRNA-Glu gene, complete sequence; and unknown genes.    44   0.001  4
AC004157|AC004157.8 Plasmodium falciparum chromosome 12 clone 3D7, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   0.001  14
BX842645|BX842645.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 4/4.    34   0.002  9
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPQ9) RecName: Full=Rho-related protein racJ; Flags: Precurso...   267   4e-70
CS026775_1(CS026775|pid:none) Sequence 327 from Patent WO2005014...    96   1e-18
GN079563_1(GN079563|pid:none) Sequence 166 from Patent WO2009027...    96   1e-18
(P40792) RecName: Full=Ras-related protein Rac1; Flags: Precurso...    96   2e-18
AY190720_1(AY190720|pid:none) Pagrus major ras-related C3 botuli...    96   2e-18
GN079621_1(GN079621|pid:none) Sequence 224 from Patent WO2009027...    95   3e-18
(P15153) RecName: Full=Ras-related C3 botulinum toxin substrate ...    94   4e-18
M64595_1(M64595|pid:none) Human small G protein (Gx) mRNA, 3' end.     94   4e-18
CS026539_1(CS026539|pid:none) Sequence 91 from Patent WO20050148...    94   4e-18
Z82188_6(Z82188|pid:none) Human DNA sequence from clone RP1-151B...    94   4e-18
protein update 2009. 6.14
PSORT 

 psg: 0.03  gvh: 0.52  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.06
 nuc: 0.95  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSK168 is nuc
5' end seq. ID SSK168F
5' end seq. 
>SSK168F.Seq
ANTTCATATCAATTTTTTGANAATTATTTTTATTATTATTTATTATTAGCAATTAATATT
AATATTTTAATTTTGAAAATTAAATTTTAATTTTAATTTTTAAAAAAAAAAAAAAAAAAA
CTAAAAAAAAAAAAAGAGAAACAAACAATTATTATTTTTATCACATCAAAAATCATAAAT
CAAAAATAGATAATTAATACCTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA----------
Length of 5' end seq. 252
3' end seq. ID SSK168Z
3' end seq. 
>SSK168Z.Seq
----------AAAACCATTAAAATTAAGATTAGTTATTGGTGATCAAAATGAATTAAGAA
GATTAAACCAAATTGAATTTAATGATGTTTTTTTAATTTGTTTTTCAGTTGATTCAAAGG
CATCATATGATAATATTGAAAAATGGAATACAGAAATTAGAAAAATCCTGCCAACTCCAA
ATATAATATTAGTTGGTACAAAGATTGATTTAAGAAAAGAAGGTGGAGAACTTAAAAAAT
CAATTGTGACACAAGAAATGGGAATTGAAAAAGCAAAAGAAATAAATGCAATAAAATATA
TGGAGTGTTCAACAGCAACCTACGAAGGAGTTAAAGAAGTTTTCGACGAAAGTATAAATA
TCTACATGACAAAAAAGCTTTATATCCAAGATTTAAGAAAAAAAAGTTTTTTAATTCCAA
AGAAAAATACAAACAAAAAATCCTGTAAAANNTAATAATAATAATAATAATAATAATAAT
AATAAAAAATAATTAATAGTAGAAATATAAATAGTTATCAGTTTTTCCAAAATATGCGCA
TATTTTTTTTTAAATAAATAAACCCCNTTTTTTTGTAAATAAATATAA
Length of 3' end seq. 578
Connected seq. ID SSK168P
Connected seq. 
>SSK168P.Seq
ANTTCATATCAATTTTTTGANAATTATTTTTATTATTATTTATTATTAGCAATTAATATT
AATATTTTAATTTTGAAAATTAAATTTTAATTTTAATTTTTAAAAAAAAAAAAAAAAAAA
CTAAAAAAAAAAAAAGAGAAACAAACAATTATTATTTTTATCACATCAAAAATCATAAAT
CAAAAATAGATAATTAATACCTATATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA----------AAAACCATTAAAATTAAGATTAGTTATTGGTGATCAAA
ATGAATTAAGAAGATTAAACCAAATTGAATTTAATGATGTTTTTTTAATTTGTTTTTCAG
TTGATTCAAAGGCATCATATGATAATATTGAAAAATGGAATACAGAAATTAGAAAAATCC
TGCCAACTCCAAATATAATATTAGTTGGTACAAAGATTGATTTAAGAAAAGAAGGTGGAG
AACTTAAAAAATCAATTGTGACACAAGAAATGGGAATTGAAAAAGCAAAAGAAATAAATG
CAATAAAATATATGGAGTGTTCAACAGCAACCTACGAAGGAGTTAAAGAAGTTTTCGACG
AAAGTATAAATATCTACATGACAAAAAAGCTTTATATCCAAGATTTAAGAAAAAAAAGTT
TTTTAATTCCAAAGAAAAATACAAACAAAAAATCCTGTAAAANNTAATAATAATAATAAT
AATAATAATAATAATAAAAAATAATTAATAGTAGAAATATAAATAGTTATCAGTTTTTCC
AAAATATGCGCATATTTTTTTTTAAATAAATAAACCCCNTTTTTTTGTAAATAAATATAA
Length of connected seq. 830
Full length Seq ID -
Full length Seq. -
Length of full length seq. -