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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK167
Library SS
(Link to library)
Clone ID SSK167
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11514-1|Contig-U13436-1
Original site URL
Representative seq. ID SSK167P
(Link to Original site)
Representative DNA sequence 
>SSK167 (SSK167Q) /CSM/SS/SSK1-C/SSK167Q.Seq.d/
CTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTCATTTAAATAAATAAAAGT
TATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCAATATTTATTTTTAGAAA
TTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAX
XXXXXXXXXATAATAATAATAATAATAATTAATTTTTTTTCGTTTCCAATTATCAACCAT
AGTGTAATATGTTGGAGTGTCTTTTAAATAAATGTAATAATAATAATAATAATAATAATA
ACATTTTTAGTAAATATAATAAACAATTTAACCTTTTAAAAATTAAAATTTAAAAACACA
AAAATAAATTGTTTTCACAATAATTAATAATTATAATAATTTTTTAAAAAAATCTCATCA
ATTATTTAAATAATCTTTAAA
sequence update 1998.11.17
Translated Amino Acid sequence 
lflva*kknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIKKKKKKKKKK-
--

---IIIIIIINFFSFPIINHSVICWSVF*inviiiiiiiitflvniinnltf*klkfknt
kincfhnn**l**ffkkissii*iifk
Translated Amino Acid sequence (All Frames) 
Frame A:
lflva*kknl*q*fi*inksylnknfklyiqffpniyf*KFFKNKYFIIKKKKKKKKKK-
--

---IIIIIIINFFSFPIINHSVICWSVF*inviiiiiiiitflvniinnltf*klkfknt
kincfhnn**l**ffkkissii*iifk

Frame B:
ff*lhkkktynnnsfk*ikvi*iktsnyifnffpififrnslkinill*kkkkkkkkkk-
--

---******liffrfqlstiv*yvgvsfk*m*********hf**i**ti*pfkn*nlktq
k*ivftiinnynnflkkshqlfk*sl

Frame C:
ffscikkklitiihlnk*klfk*klqiiysifsqylfleil*k*ifyykkkkkkkkkkk-
--

---nnnnnn*fffvsnyqp*cnmlecllnkcnnnnnnnnnifskynkqfnllkiki*khk
nklfsq*liiiiif*knlinylnnl*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK167 (SSK167Q) /CSM/SS/SSK1-C/SSK167Q.Seq.d/                        101   9e-21
VSB865 (VSB865Q) /CSM/VS/VSB8-C/VSB865Q.Seq.d/                         84   2e-15
VSE402 (VSE402Q) /CSM/VS/VSE4-A/VSE402Q.Seq.d/                         80   3e-14
VSE392 (VSE392Q) /CSM/VS/VSE3-D/VSE392Q.Seq.d/                         80   3e-14
VSK175 (VSK175Q) /CSM/VS/VSK1-D/VSK175Q.Seq.d/                         46   4e-04
VSJ882 (VSJ882Q) /CSM/VS/VSJ8-D/VSJ882Q.Seq.d/                         46   4e-04
VSJ520 (VSJ520Q) /CSM/VS/VSJ5-A/VSJ520Q.Seq.d/                         46   4e-04
VSF112 (VSF112Q) /CSM/VS/VSF1-A/VSF112Q.Seq.d/                         46   4e-04
VSA591 (VSA591Q) /CSM/VS/VSA5-D/VSA591Q.Seq.d/                         46   4e-04
VSA458 (VSA458Q) /CSM/VS/VSA4-C/VSA458Q.Seq.d/                         46   4e-04
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

CG930821|CG930821.1 MBEKP34TF mth2 Medicago truncatula genomic clone 75F20, genomic survey sequence.    46   7e-08  2
CG962067|CG962067.1 MBELB33TF mth2 Medicago truncatula genomic clone 78E18, genomic survey sequence.    46   8e-08  2
AY022565|AY022565.1 Oryza sativa microsatellite MRG4890 containing (ATT)X12, genomic sequence.    44   3e-07  2
AY023400|AY023400.1 Oryza sativa microsatellite MRG5725 containing (TAT)X13, closest to marker RG908, genomic sequence.    44   3e-07  2
AY022503|AY022503.1 Oryza sativa microsatellite MRG4828 containing (ATA)X13, genomic sequence.    44   3e-07  2
AY022351|AY022351.1 Oryza sativa microsatellite MRG4676 containing (AAT)X13, genomic sequence.    44   3e-07  2
AY022570|AY022570.1 Oryza sativa microsatellite MRG4895 containing (ATT)X14, genomic sequence.    44   3e-07  2
AY022505|AY022505.1 Oryza sativa microsatellite MRG4830 containing (ATA)X15, genomic sequence.    44   3e-07  2
AY023405|AY023405.1 Oryza sativa microsatellite MRG5730 containing (TAT)X16, genomic sequence.    44   3e-07  2
AY022373|AY022373.1 Oryza sativa microsatellite MRG4698 containing (AAT)X20, closest to marker RG476X, genomic sequence.    44   3e-07  2
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU016579_19(EU016579|pid:none) Uncultured marine microorganism H...    33   4.0
protein update 2009. 2. 2
PSORT 

 psg: 0.03  gvh: 0.41  alm: 0.27  top: -0.17  tms: 0.07  mit: 0.45  mip: 0.00
 nuc: 0.40  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.24  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 16.0 %: Golgi
	 16.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSK167 is nuc
5' end seq. ID SSK167F
5' end seq. 
>SSK167F.Seq
CTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTCATTTAAATAAATAAAAGT
TATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCAATATTTATTTTTAGAAA
TTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-
---------
Length of 5' end seq. 179
3' end seq. ID SSK167Z
3' end seq. 
>SSK167Z.Seq
----------ATAATAATAATAATAATAATTAATTTTTTTTCGTTTCCAATTATCAACCA
TAGTGTAATATGTTGGAGTGTCTTTTAAATAAATGTAATAATAATAATAATAATAATAAT
AACATTTTTAGTAAATATAATAAACAATTTAACCTTTTAAAAATTAAAATTTAAAAACAC
AAAAATAAATTGTTTTCACAATAATTAATAATTATAATAATTTTTTAAAAAAATCTCATC
AATTATTTAAATAATCTTTAAA
Length of 3' end seq. 252
Connected seq. ID SSK167P
Connected seq. 
>SSK167P.Seq
CTTTTTTTAGTTGCATAAAAAAAAAACTTATAACAATAATTCATTTAAATAAATAAAAGT
TATTTAAATAAAAACTTCAAATTATATATTCAATTTTTTCCCAATATTTATTTTTAGAAA
TTCTTTAAAAATAAATATTTTATTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-
---------ATAATAATAATAATAATAATTAATTTTTTTTCGTTTCCAATTATCAACCAT
AGTGTAATATGTTGGAGTGTCTTTTAAATAAATGTAATAATAATAATAATAATAATAATA
ACATTTTTAGTAAATATAATAAACAATTTAACCTTTTAAAAATTAAAATTTAAAAACACA
AAAATAAATTGTTTTCACAATAATTAATAATTATAATAATTTTTTAAAAAAATCTCATCA
ATTATTTAAATAATCTTTAAA
Length of connected seq. 431
Full length Seq ID -
Full length Seq. -
Length of full length seq. -