>SSK163 (SSK163Q) /CSM/SS/SSK1-C/SSK163Q.Seq.d/
XXXXXXXXXXTTTATGAGATACATTTAAATCGTATCCAATTGTTGGAACTGTAACAGAGA
CAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAACCAAAGCAT
CAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTGGTTATGAAT
ATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTT
CTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTGGTAGTTATA
AACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAATTCTTTAGAG
AAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTCTTCGTTATC
AAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGGGTCAAAATC
AAGATAAATGGTTTTCTGGTGGTTTACCATNNNNNTAATAATAATAATAATAATAATAAT
TATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTATAAATAAAATTCT
AAAAATAAAAAATAAAAAACTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

---l*DTFKSYPIVGTVTETMEKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEY
EDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFRE
DKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLPXX********l
yklhkgftigvlilv*ikf*k*kiknyikkkkkkkkk

Frame A:
---l*DTFKSYPIVGTVTETMEKKKGFTNRFLSTSETKASVSVGFFGCESSMEVTSGYEY
EDTVTSEETRSWSQTLNEGSYIVYQNVLVYAYIIYGGSYKPYIDQMNKFNPGLNIKFFRE
DKCIFFVPINRDDAFTLRYQDNTWDPVEYDVLIDYLGQNQDKWFSGGLPXX********l
yklhkgftigvlilv*ikf*k*kiknyikkkkkkkkk


Frame B:
---yeihlnriqllel*qrqwkrkkvspidsyqlvkpkhqfqsdslvvnhrwklqvvmnm
ktllhlkklevgvkl*mkvlilfiktf*fmli*smvvvinhtlik*inlild*isnslek
invsflyqlivmmpslfvikiihgiqlnmmf*litwvkikingflvvyhxxnnnnnnnny
inyikvsllvf*swyk*nsknkk*kti*kkkkkkkkk


Frame C:
---mryi*ivsncwncnrdngkekrfhq*ilin**nqsisfsrilwl*iidgsykwl*i*
rhcyi*rn*klesnfk*rflyclskrfslclynlww*l*tih*sne*i*swikyqil*rr
*mylfctn*s**clhsslsr*ymgss*i*cfn*llgsksr*mvfwwftxxxiiiiiiiii
*it*rfhywcfnpginkilkiknkklykkkkkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK163 (SSK163Q) /CSM/SS/SSK1-C/SSK163Q.Seq.d/                        991   0.0
VSK377 (VSK377Q) /CSM/VS/VSK3-D/VSK377Q.Seq.d/                        975   0.0
VSJ730 (VSJ730Q) /CSM/VS/VSJ7-B/VSJ730Q.Seq.d/                        975   0.0
VSF255 (VSF255Q) /CSM/VS/VSF2-C/VSF255Q.Seq.d/                        975   0.0
VSD543 (VSD543Q) /CSM/VS/VSD5-B/VSD543Q.Seq.d/                        975   0.0
VSC792 (VSC792Q) /CSM/VS/VSC7-D/VSC792Q.Seq.d/                        975   0.0
VHJ463 (VHJ463Q) /CSM/VH/VHJ4-C/VHJ463Q.Seq.d/                        975   0.0
VHB403 (VHB403Q) /CSM/VH/VHB4-A/VHB403Q.Seq.d/                        975   0.0
VFJ763 (VFJ763Q) /CSM/VF/VFJ7-C/VFJ763Q.Seq.d/                        975   0.0
VFI758 (VFI758Q) /CSM/VF/VFI7-C/VFI758Q.Seq.d/                        975   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U48706|U48706.1 Dictyostelium discoideum small aggregate formation (smlA) gene, complete cds.   963   0.0    3
X94341|X94341.1 D.discoideum mRNA for unknown protein with homology to spore germination protein.    86   3e-33  5
BX572091|BX572091.1 Prochlorococcus marinus MED4 complete genome; segment 2/5.    36   0.037  10
AC145202|AC145202.4 Medicago truncatula clone mth2-15e9, WORKING DRAFT SEQUENCE, 3 unordered pieces.    34   0.074  5
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    32   0.11   12
AC116158|AC116158.5 Homo sapiens chromosome , clone RP11-102L12, complete sequence.    44   0.27   6
AE014841|AE014841.1 Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete sequence.    32   0.28   10
AL589868|AL589868.4 Human DNA sequence *** SEQUENCING CANCELLED *** from clone  RP13-120E13.    34   0.37   9
AC132426|AC132426.3 Mus musculus chromosome 2 clone RP23-312J19, complete sequence.    46   0.63   1
AL928811|AL928811.8 Mouse DNA sequence from clone RP23-74P23 on chromosome 2.    46   0.63   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_42(AC116330|pid:none) Dictyostelium discoideum chromoso...    43   0.007
AC116330_41(AC116330|pid:none) Dictyostelium discoideum chromoso...    42   0.016
CP000712_1048(CP000712|pid:none) Pseudomonas putida F1, complete...    41   0.035
AE001362_167(AE001362|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.66
DQ790236_1(DQ790236|pid:none) Champereia manillana acetyl co-A c...    36   0.86
DQ790237_1(DQ790237|pid:none) Agonandra macrocarpa acetyl co-A c...    35   1.5
AY332625_22(AY332625|pid:none) Campylobacter jejuni serotype HS:...    35   1.5
BX545858_22(BX545858|pid:none) Campylobacter jejuni.                   35   2.5
AY934867_3(AY934867|pid:none) Campylobacter jejuni subsp. jejuni...    35   2.5
CP000932_787(CP000932|pid:none) Campylobacter lari RM2100, compl...    35   2.5

 psg: 0.87  gvh: 0.44  alm: 0.44  top: 0.60  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSK163 is cyt

>SSK163Z.Seq
----------TTTATGAGATACATTTAAATCGTATCCAATTGTTGGAACTGTAACAGAGA
CAATGGAAAAGAAAAAAGGTTTCACCAATAGATTCTTATCAACTAGTGAAACCAAAGCAT
CAGTTTCAGTCGGATTCTTTGGTTGTGAATCATCGATGGAAGTTACAAGTGGTTATGAAT
ATGAAGACACTGTTACATCTGAAGAAACTAGAAGTTGGAGTCAAACTTTAAATGAAGGTT
CTTATATTGTTTATCAAAACGTTTTAGTTTATGCTTATATAATCTATGGTGGTAGTTATA
AACCATACATTGATCAAATGAATAAATTTAATCCTGGATTAAATATCAAATTCTTTAGAG
AAGATAAATGTATCTTTTTTGTACCAATTAATCGTGATGATGCCTTCACTCTTCGTTATC
AAGATAATACATGGGATCCAGTTGAATATGATGTTTTAATTGATTACTTGGGTCAAAATC
AAGATAAATGGTTTTCTGGTGGTTTACCATNNNNNTAATAATAATAATAATAATAATAAT
TATATAAATTACATAAAGGTTTCACTATTGGTGTTTTAATCCTGGTATAAATAAAATTCT
AAAAATAAAAAATAAAAAACTATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA