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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK156
Library SS
(Link to library)
Clone ID SSK156
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16429-1
Original site URL
Representative seq. ID SSK156E
(Link to Original site)
Representative DNA sequence 
>SSK156 (SSK156Q) /CSM/SS/SSK1-C/SSK156Q.Seq.d/
CATCAATAGAAAATCATCAGCCGCTCGTTATTTAGAGTCCAAAGGTGTAAAACCAGAAGA
TTTTAACACCTATGGATCTCGTAGAGGTAATGATGAAATTATGGTTAGAGGTACCTTTGC
CAATNCGTATTGTTAATAAATTGGCTCCAGCCCGTTGGTCCACAAACANCCTATGTACCA
ACTGGTGAGTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGTCATCAA
CTCATTGTTTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCTGCCAAA
GGTCCATACCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATTCATAGA
TCCAATCTCGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAATGCCTCT
ACTTTGGGTCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACTGATAAATCCCTC
ATTAAAACTGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAAACTATC
CTTCGTTTCGATACTCCAATCGAAGTTGAATATTGGGCAAATAATGGTATCTTATCTTAT
GTTTTAAGAAAACTTTTACATTAATTTCTTTTTTTAATATAAAATTATAAAATAAAAAAA
AATAATATTATTTAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
hq*kiisrslfrvqrcktrrf*hlwis*r***nyg*RYLCQXVLLINWLQPVGPQTXYVP
TGELMFISDAAEKYQSEGHQLIVLAGSDYGSGSSRDWAAKGPYLQGIKCVIAISFERIHR
SNLVGMGIIPLQFQPGQNASTLGLTGKEQFNIELPTDKSLIKTGQTVKVTTNCGKSFETI
LRFDTPIEVEYWANNGILSYVLRKLLH*flfli*nykikknnii*
Translated Amino Acid sequence (All Frames) 
Frame A:
hq*kiisrslfrvqrcktrrf*hlwis*r***nyg*RYLCQXVLLINWLQPVGPQTXYVP
TGELMFISDAAEKYQSEGHQLIVLAGSDYGSGSSRDWAAKGPYLQGIKCVIAISFERIHR
SNLVGMGIIPLQFQPGQNASTLGLTGKEQFNIELPTDKSLIKTGQTVKVTTNCGKSFETI
LRFDTPIEVEYWANNGILSYVLRKLLH*flfli*nykikknnii*


Frame B:
inrkssaaryleskgvkpedfntygsrrgndeimvrgtfanxyc**igssplvhkxpmyq
lvs*clfqmlqkninqkvinslfwlvvimalvvleiglpkvhtfkelsvslpshlnvfid
pislvwvlshcnsnqvkmpllwvslvknnsissyqlinpslklvkp*rlplivvnllkls
fvsilqsklnigqimvsylmf*enfyinfff*ykiik*kkiilf


Frame C:
sienhqplvi*spkv*nqkiltpmdlvevmmklwlevplpxrivnklaparwstnxlctn
w*vnvyfrccrkisirrssthcfgw**lwlw*f*rlgcqrsipsrn*vchchli*tys*i
qsrwygyypiaiptrskclyfgshw*rtiqyrvtn**iph*nwsnrkgyh*lw*if*nyp
sfrysnrs*ilgk*wylilcfkktftlisffnikl*nkkk*yyl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK156 (SSK156Q) /CSM/SS/SSK1-C/SSK156Q.Seq.d/                       1241   0.0
AHK255 (AHK255Q) /CSM/AH/AHK2-C/AHK255Q.Seq.d/                       1207   0.0
VHQ461 (VHQ461Q) /CSM/VH/VHQ4-C/VHQ461Q.Seq.d/                       1199   0.0
VHQ432 (VHQ432Q) /CSM/VH/VHQ4-B/VHQ432Q.Seq.d/                       1199   0.0
VHQ267 (VHQ267Q) /CSM/VH/VHQ2-C/VHQ267Q.Seq.d/                       1199   0.0
VHQ262 (VHQ262Q) /CSM/VH/VHQ2-C/VHQ262Q.Seq.d/                       1199   0.0
VHP311 (VHP311Q) /CSM/VH/VHP3-A/VHP311Q.Seq.d/                       1199   0.0
VHO844 (VHO844Q) /CSM/VH/VHO8-B/VHO844Q.Seq.d/                       1199   0.0
VHO678 (VHO678Q) /CSM/VH/VHO6-D/VHO678Q.Seq.d/                       1199   0.0
VHK789 (VHK789Q) /CSM/VH/VHK7-D/VHK789Q.Seq.d/                       1199   0.0
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CF086988|CF086988.1 QHM12F02.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM12F02, mRNA sequence.    52  3e-06  2
BQ511380|BQ511380.2 EST618795 Generation of a set of potato cDNA clones for microarray analyses mixed potato tissues Solanum tuberosum cDNA clone STMHR19 5' end, mRNA sequence.    52  3e-05  2
AW625205|AW625205.1 EST319112 tomato radicle, 5 d post-imbibition, Cornell University Lycopersicon esculentum cDNA clone cLEZ11O16 5', mRNA sequence.    52  4e-05  2
AL786411|AL786411.1 Xenopus tropicalis EST, clone TNeu105d10 5'.    58  1e-04  1
AL962776|AL962776.1 Xenopus tropicalis EST, clone TGas107b17 5'.    58  1e-04  1
AL784206|AL784206.1 Xenopus tropicalis EST, clone TGas082k15 5'.    58  1e-04  1
BI927352|BI927352.1 EST547241 tomato flower, 3 - 8 mm buds Lycopersicon esculentum cDNA clone cTOB22E7 5' end, mRNA sequence.    52  6e-04  2
BM110777|BM110777.1 EST558313 potato roots Solanum tuberosum cDNA clone cPRO9O17 5' end , mRNA sequence.    52  6e-04  2
AW622039|AW622039.1 EST312837 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX14G21 5', mRNA sequence.    52  7e-04  2
BG889764|BG889764.1 EST515615 cSTD Solanum tuberosum cDNA clone cSTD15K20 5' sequence, mRNA sequence.    52  7e-04  2
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54X73) RecName: Full=Probable cytoplasmic aconitate hydratase;...   317   e-104
AP008209_256(AP008209|pid:none) Oryza sativa (japonica cultivar-...   203   1e-63
AB236788_1(AB236788|pid:none) Trifolium pratense RNA for putativ...   202   5e-63
BT060820_1(BT060820|pid:none) Zea mays full-length cDNA clone ZM...   201   2e-62
BT060665_1(BT060665|pid:none) Zea mays full-length cDNA clone ZM...   200   3e-62
(P49608) RecName: Full=Aconitate hydratase, cytoplasmic;        ...   199   2e-61
AY050485_1(AY050485|pid:none) Prunus avium putative aconitase mR...   197   4e-61
(Q23500) RecName: Full=Probable cytoplasmic aconitate hydratase;...   193   5e-61
(Q9SIB9) RecName: Full=Aconitate hydratase 2, mitochondrial;    ...   196   2e-60
BC168529_1(BC168529|pid:none) Xenopus tropicalis cDNA clone MGC:...   194   2e-60
protein update 2009. 7. 8
PSORT 

 psg: 0.88  gvh: 0.71  alm: 0.47  top: 0.20  tms: 0.00  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: Golgi

>> prediction for SSK156 is exc
5' end seq. ID SSK156F
5' end seq. 
>SSK156F.Seq
CATCAATAGAAAATCATCAGCCGCTCGTTATTTAGAGTCCAAAGGTGTAAAACCAGAAGA
TTTTAACACCTATGGATCTCGTAGAGGTAATGATGAAATTATGGTTAGAGGTACCTTTGC
CAATACTCGTATTGTTAATAAATTGGCTCCAGCCGTTGGTCCACAAACAACCTATGTACC
AACTGGTGAGTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGTCATCA
ACTCATTGTTTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCTGCCAA
AGGTCCATACCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATTCATAG
ATCCAATCTCGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAATGCCTC
TACTTTGGGTCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACTGATAAATCCCT
CATTAAAACTGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAAACTAT
CCTTCGTTTCGATACTCCAATCGAAGTTGAATATTGGGCAAATAATGGTATCTTATCTTA
TGTTTTAAGAAAACTTTTACATTAATTTCTTTTTTTAATATAAAAT----------
Length of 5' end seq. 646
3' end seq. ID SSK156Z
3' end seq. 
>SSK156Z.Seq
----------CCGTATTGTTAATAAATTGGCTCCAGCCCGTTGGTCCACAAACACCCTAT
GTACCAACTGGTGAGTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGT
CATCAACTCATTGTTTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCT
GCCAAAGGTCCATACCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATT
CATAGATCCAATCTCGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAAT
GCCTCTACTTTGGGTCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACTGATAAA
TCCCTCATTAAAACTGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAA
ACTATCCTTCGTTTCGATACTCCAATCGAAGTTGAATATTGGGCAAATAATGGTATCTTA
TCTTATGTTTTAAGAAAACTTTTACATTAATTTCTTTTTTTAATATAAAATAAAAAAAAA
TAATATTATTTAAAACAAAAAA
Length of 3' end seq. 552
Connected seq. ID SSK156P
Connected seq. 
>SSK156P.Seq
CATCAATAGAAAATCATCAGCCGCTCGTTATTTAGAGTCCAAAGGTGTAAAACCAGAAGA
TTTTAACACCTATGGATCTCGTAGAGGTAATGATGAAATTATGGTTAGAGGTACCTTTGC
CAATACTCGTATTGTTAATAAATTGGCTCCAGCCGTTGGTCCACAAACAACCTATGTACC
AACTGGTGAGTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGTCATCA
ACTCATTGTTTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCTGCCAA
AGGTCCATACCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATTCATAG
ATCCAATCTCGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAATGCCTC
TACTTTGGGTCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACTGATAAATCCCT
CATTAAAACTGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAAACTAT
CCTTCGTTTCGATACTCCAATCGAAGTTGAATATTGGGCAAATAATGGTATCTTATCTTA
TGTTTTAAGAAAACTTTTACATTAATTTCTTTTTTTAATATAAAAT----------CCGT
ATTGTTAATAAATTGGCTCCAGCCCGTTGGTCCACAAACACCCTATGTACCAACTGGTGA
GTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGTCATCAACTCATTGT
TTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCTGCCAAAGGTCCATA
CCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATTCATAGATCCAATCT
CGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAATGCCTCTACTTTGGG
TCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACTGATAAATCCCTCATTAAAAC
TGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAAACTATCCTTCGTTT
CGATACTCCAATCGAAGTTGAATATTGGGCAAATAATGGTATCTTATCTTATGTTTTAAG
AAAACTTTTACATTAATTTCTTTTTTTAATATAAAATAAAAAAAAATAATATTATTTAAA
ACAAAAAA
Length of connected seq. 1198
Full length Seq ID SSK156E
Full length Seq. 
>SSK156E.Seq
CATCAATAGAAAATCATCAGCCGCTCGTTATTTAGAGTCCAAAGGTGTAAAACCAGAAGA
TTTTAACACCTATGGATCTCGTAGAGGTAATGATGAAATTATGGTTAGAGGTACCTTTGC
CAATNCGTATTGTTAATAAATTGGCTCCAGCCCGTTGGTCCACAAACANCCTATGTACCA
ACTGGTGAGTTAATGTTTATTTCAGATGCTGCAGAAAAATATCAATCAGAAGGTCATCAA
CTCATTGTTTTGGCTGGTAGTGATTATGGCTCTGGTAGTTCTAGAGATTGGGCTGCCAAA
GGTCCATACCTTCAAGGAATTAAGTGTGTCATTGCCATCTCATTTGAACGTATTCATAGA
TCCAATCTCGTTGGTATGGGTATTATCCCATTGCAATTCCAACCAGGTCAAAATGCCTCT
ACTTTGGGTCTCACTGGTAAAGAACAATTCAATATCGAGTTACCAACTGATAAATCCCTC
ATTAAAACTGGTCAAACCGTAAAGGTTACCACTAATTGTGGTAAATCTTTTGAAACTATC
CTTCGTTTCGATACTCCAATCGAAGTTGAATATTGGGCAAATAATGGTATCTTATCTTAT
GTTTTAAGAAAACTTTTACATTAATTTCTTTTTTTAATATAAAATTATAAAATAAAAAAA
AATAATATTATTTAA
Length of full length seq. 675