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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK151
Library SS
(Link to library)
Clone ID SSK151
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00319-1
Original site URL
Representative seq. ID SSK151P
(Link to Original site)
Representative DNA sequence 
>SSK151 (SSK151Q) /CSM/SS/SSK1-C/SSK151Q.Seq.d/
GNATTGGATAACATTAATAATAATAATAATAATAGAATAAATGATGGATTAAATAATGAT
TTACCAGTTAACACCAATAGTGATAGTGCTGGTGGTAAATCAGATTCAGAGGGTAGTGGT
AGTGGTAGTGGTAGTATAAAACCAACAAACTCTTCATCACATGAAAATAATGGTGGTAAT
TCAACAAATAGCTCAAGTGATAATCATCATCATAATAGCAGTAGCAGCGAAGATAATAAA
GGAAGTAGTGATCATAAGAGCAGCAGTGAGGATAGTAAAGGTAGCAGTGAGGATCATAAG
GGTAGTAGTAGTGAGGATCATAAAGGTAGCAGTAGTGAGGGTCATAAAGGTAGCAGTAGT
GGTGAGGATAGTAAAGGAAGTGAAGATAGTAAAGGTAGCGGTACGAAGGTCATAAAGGTA
GCAGTGAAGATAGCAGCACTGATAATAATAGTAGTAGCAAAAATAGTAGCAGCGAAGAAC
CAACACCCAAACCAACTGAAACCCCGTCACCAACTAAATCTCCAACACCATCACCAACCC
CATCACCAACACCATCACCAACACCATCACCAACACCATCACCAACACCAACAACAACTC
CATCACCAACACCAAATCAAGATTGTACATTATGTGATTTAGGATTCTTTGCAAATGAAT
CAATTACAGAATGTTCACAATGTAGTATTAAAGGTGGGTGTGTAGAGACTAAATTCTGTC
XXXXXXXXXXCTCTTATTCATACAAACCCTCATCATTCTGTTCACTTTGCGTTGCTGGTA
CTTTCAACTCATTCCAAGGTCAATCCTATTGTCTTGAATGTAGTCCAGGTTCATATAATC
CAAACTCTGGTGGTTCTTCAATTCAAGATTGTATAAAATGTCCAGATGGTTCATATTGTC
CAAACTCTGGTATGGCTGCACCTTTTAGTTGTCCACAAGATAAATACTGCACAAATGGTG
CAATATCTCCAGATTCTTGTCAATTGTTTTTCTCCTCAAATTCTGGTTCCTCTGGTTGCT
CTGCAAATAAATGGTTATATATCGTAAGTTTTGGAAGTGCTGCTATCGTTTTAATTGGTA
TTGGTGTAATTTGGAAATATGTTAGTTATAAAAAATCAAAGAAACAAATCGTTAACACTG
AATCAAGCAGACTTATTCCAAAACCAACTGATGGTCCAGAATATGGTGGTTTCTAGGAAA
AAAAAAAAACAAAATCAACTAACTATCCAATAGAATGTAATATTCATTTTTTATTGATTC
AAACCATTTTAATAGAATGGTTATTTCCATTTATTTTAAAAACT
sequence update 1998.11.17
Translated Amino Acid sequence 
ig*h*******nk*wik**fts*hq***cww*irfrg*w*w*w*yktnklfit*k*ww*f
nk*lk**sss**q*qrr**rk**s*eqq*g**r*q*gs*g****gs*r*q**gs*r*q*w
*g**rk*r**r*RYEGHKGSSEDSSTDNNSSSKNSSSEEPTPKPTETPSPTKSPTPSPTP
SPTPSPTPSPTPSPTPTTTPSPTPNQDCTLCDLGFFANESITECSQCSIKGGCVETKFC-
--

---SYSYKPSSFCSLCVAGTFNSFQGQSYCLECSPGSYNPNSGGSSIQDCIKCPDGSYCP
NSGMAAPFSCPQDKYCTNGAISPDSCQLFFSSNSGSSGCSANKWLYIVSFGSAAIVLIGI
GVIWKYVSYKKSKKQIVNTESSRLIPKPTDGPEYGGF*ekkktkstnypiecnihflliq
tiliewlfpfilkt
Translated Amino Acid sequence (All Frames) 
Frame A:
xldninnnnnnrindglnndlpvntnsdsaggksdsegsgsgsgsikptnssshennggn
stnsssdnhhhnssssednkgssdhksssedskgssedhkgsssedhkgssseghkgsss
gedskgsedskgsgtkvikvavkiaaliiivvakivaaknqhpnqlkprhqlnlqhhhqp
hhqhhhqhhhqhhhqhqqqlhhqhqikivhyvi*dslqmnqlqnvhnvvlkvgv*rlnsv
---

---llfiqtliilftlrcwyfqliprsills*m*srfi*sklwwffnsrlykmsrwfils
klwygctf*lstr*ilhkwcnisrflsivfllkfwflwllck*mviyrkfwkccyrfnwy
wcnleic*l*kiketnr*h*ikqtysktn*wsriwwflgkkknkin*lsnrm*ysffids
nhfnrmvisiyfkn

Frame B:
xwitliiiiiie*mmd*imiyqltpivivlvvnqiqrvvvvvvvv*nqqtlhhmkimvvi
qqiaqviiiiiiavaakiikevviiraavrivkvavriirvvvvriikvavvrvikvavv
vrivkevkivkvavrrs*r*q*r*qh******qk**qrrtntqtn*npvtn*isntitnp
itntitntitntitntnnnsitntksrlyim*frilck*inyrmftm*y*rwvcrd*il-
--

---SYSYKPSSFCSLCVAGTFNSFQGQSYCLECSPGSYNPNSGGSSIQDCIKCPDGSYCP
NSGMAAPFSCPQDKYCTNGAISPDSCQLFFSSNSGSSGCSANKWLYIVSFGSAAIVLIGI
GVIWKYVSYKKSKKQIVNTESSRLIPKPTDGPEYGGF*ekkktkstnypiecnihflliq
tiliewlfpfilkt

Frame C:
ig*h*******nk*wik**fts*hq***cww*irfrg*w*w*w*yktnklfit*k*ww*f
nk*lk**sss**q*qrr**rk**s*eqq*g**r*q*gs*g****gs*r*q**gs*r*q*w
*g**rk*r**r*RYEGHKGSSEDSSTDNNSSSKNSSSEEPTPKPTETPSPTKSPTPSPTP
SPTPSPTPSPTPSPTPTTTPSPTPNQDCTLCDLGFFANESITECSQCSIKGGCVETKFC-
--

---lihtnphhsvhfallvlsthskvnpivlnvvqvhiiqtlvvlqfkiv*nvqmvhivq
tlvwlhllvvhkintaqmvqylqilvncfspqilvplvalqingyis*vlevllsf*lvl
v*fgnmlviknqrnksltlnqadlfqnqlmvqnmvvsrkkkkqnqltiq*nvifify*fk
pf**ngyfhlf*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK151 (SSK151Q) /CSM/SS/SSK1-C/SSK151Q.Seq.d/                       1249   0.0
AFL778 (AFL778Q) /CSM/AF/AFL7-D/AFL778Q.Seq.d/                        928   0.0
SLE314 (SLE314Q) /CSM/SL/SLE3-A/SLE314Q.Seq.d/                        926   0.0
SLB771 (SLB771Q) /CSM/SL/SLB7-C/SLB771Q.Seq.d/                        926   0.0
SSI839 (SSI839Q) /CSM/SS/SSI8-B/SSI839Q.Seq.d/                        894   0.0
AFF875 (AFF875Q) /CSM/AF/AFF8-D/AFF875Q.Seq.d/                        846   0.0
AFH161 (AFH161Q) /CSM/AF/AFH1-C/AFH161Q.Seq.d/                        831   0.0
SSL291 (SSL291Q) /CSM/SS/SSL2-D/SSL291Q.Seq.d/                        353   4e-96
SSM311 (SSM311Q) /CSM/SS/SSM3-A/SSM311Q.Seq.d/                        192   9e-48
VHP674 (VHP674Q) /CSM/VH/VHP6-D/VHP674Q.Seq.d/                         50   9e-05
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    52   3e-06  21
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   6e-05  12
AC117080|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence.    38   1e-04  8
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48   2e-04  20
AY392443|AY392443.1 Dictyostelium discoideum possible endotoxin gene, complete cds.    48   3e-04  2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    44   3e-04  13
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    48   6e-04  13
AC115584|AC115584.2 Dictyostelium discoideum chromosome 2 map complement(3622543-3568102) strain AX4, complete sequence.    34   9e-04  8
AY162212|AY162212.1 Dictyostelium discoideum kinesin 1 gene, partial cds.    50   0.002  2
AC135751|AC135751.2 Rattus norvegicus clone CH230-82A16, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40   0.003  2
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001576_24(CP001576|pid:none) Micromonas sp. RCC299 chromosome ...    49   4e-04
AM055943_18(AM055943|pid:none) Toxoplasma gondii RH, genomic DNA...    47   0.001
CP001575_490(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    46   0.003
CR954208_50(CR954208|pid:none) Ostreococcus tauri strain OTTH059...    45   0.007
AK131552_1(AK131552|pid:none) Homo sapiens cDNA FLJ16792 fis, cl...    42   0.063
BC111690_1(BC111690|pid:none) Homo sapiens signal peptide, CUB d...    42   0.063
(Q9NQ36) RecName: Full=Signal peptide, CUB and EGF-like domain-c...    42   0.063
(Q9JJS0) RecName: Full=Signal peptide, CUB and EGF-like domain-c...    41   0.083
AL158158_5(AL158158|pid:none) Human DNA sequence from clone RP11...    40   0.14
AK027870_1(AK027870|pid:none) Homo sapiens cDNA FLJ14964 fis, cl...    40   0.14
protein update 2009. 6.14
PSORT 

 psg: 0.75  gvh: 0.20  alm: 0.21  top: 0.80  tms: 0.07  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSK151 is cyt
5' end seq. ID SSK151F
5' end seq. 
>SSK151F.Seq
GNATTGGATAACATTAATAATAATAATAATAATAGAATAAATGATGGATTAAATAATGAT
TTACCAGTTAACACCAATAGTGATAGTGCTGGTGGTAAATCAGATTCAGAGGGTAGTGGT
AGTGGTAGTGGTAGTATAAAACCAACAAACTCTTCATCACATGAAAATAATGGTGGTAAT
TCAACAAATAGCTCAAGTGATAATCATCATCATAATAGCAGTAGCAGCGAAGATAATAAA
GGAAGTAGTGATCATAAGAGCAGCAGTGAGGATAGTAAAGGTAGCAGTGAGGATCATAAG
GGTAGTAGTAGTGAGGATCATAAAGGTAGCAGTAGTGAGGGTCATAAAGGTAGCAGTAGT
GGTGAGGATAGTAAAGGAAGTGAAGATAGTAAAGGTAGCGGTACGAAGGTCATAAAGGTA
GCAGTGAAGATAGCAGCACTGATAATAATAGTAGTAGCAAAAATAGTAGCAGCGAAGAAC
CAACACCCAAACCAACTGAAACCCCGTCACCAACTAAATCTCCAACACCATCACCAACCC
CATCACCAACACCATCACCAACACCATCACCAACACCATCACCAACACCAACAACAACTC
CATCACCAACACCAAATCAAGATTGTACATTATGTGATTTAGGATTCTTTGCAAATGAAT
CAATTACAGAATGTTCACAATGTAGTATTAAAGGTGGGTGTGTAGAGACTAAATTCTGTC
----------
Length of 5' end seq. 720
3' end seq. ID SSK151Z
3' end seq. 
>SSK151Z.Seq
----------CTCTTATTCATACAAACCCTCATCATTCTGTTCACTTTGCGTTGCTGGTA
CTTTCAACTCATTCCAAGGTCAATCCTATTGTCTTGAATGTAGTCCAGGTTCATATAATC
CAAACTCTGGTGGTTCTTCAATTCAAGATTGTATAAAATGTCCAGATGGTTCATATTGTC
CAAACTCTGGTATGGCTGCACCTTTTAGTTGTCCACAAGATAAATACTGCACAAATGGTG
CAATATCTCCAGATTCTTGTCAATTGTTTTTCTCCTCAAATTCTGGTTCCTCTGGTTGCT
CTGCAAATAAATGGTTATATATCGTAAGTTTTGGAAGTGCTGCTATCGTTTTAATTGGTA
TTGGTGTAATTTGGAAATATGTTAGTTATAAAAAATCAAAGAAACAAATCGTTAACACTG
AATCAAGCAGACTTATTCCAAAACCAACTGATGGTCCAGAATATGGTGGTTTCTAGGAAA
AAAAAAAAACAAAATCAACTAACTATCCAATAGAATGTAATATTCATTTTTTATTGATTC
AAACCATTTTAATAGAATGGTTATTTCCATTTATTTTAAAAACT
Length of 3' end seq. 574
Connected seq. ID SSK151P
Connected seq. 
>SSK151P.Seq
GNATTGGATAACATTAATAATAATAATAATAATAGAATAAATGATGGATTAAATAATGAT
TTACCAGTTAACACCAATAGTGATAGTGCTGGTGGTAAATCAGATTCAGAGGGTAGTGGT
AGTGGTAGTGGTAGTATAAAACCAACAAACTCTTCATCACATGAAAATAATGGTGGTAAT
TCAACAAATAGCTCAAGTGATAATCATCATCATAATAGCAGTAGCAGCGAAGATAATAAA
GGAAGTAGTGATCATAAGAGCAGCAGTGAGGATAGTAAAGGTAGCAGTGAGGATCATAAG
GGTAGTAGTAGTGAGGATCATAAAGGTAGCAGTAGTGAGGGTCATAAAGGTAGCAGTAGT
GGTGAGGATAGTAAAGGAAGTGAAGATAGTAAAGGTAGCGGTACGAAGGTCATAAAGGTA
GCAGTGAAGATAGCAGCACTGATAATAATAGTAGTAGCAAAAATAGTAGCAGCGAAGAAC
CAACACCCAAACCAACTGAAACCCCGTCACCAACTAAATCTCCAACACCATCACCAACCC
CATCACCAACACCATCACCAACACCATCACCAACACCATCACCAACACCAACAACAACTC
CATCACCAACACCAAATCAAGATTGTACATTATGTGATTTAGGATTCTTTGCAAATGAAT
CAATTACAGAATGTTCACAATGTAGTATTAAAGGTGGGTGTGTAGAGACTAAATTCTGTC
----------CTCTTATTCATACAAACCCTCATCATTCTGTTCACTTTGCGTTGCTGGTA
CTTTCAACTCATTCCAAGGTCAATCCTATTGTCTTGAATGTAGTCCAGGTTCATATAATC
CAAACTCTGGTGGTTCTTCAATTCAAGATTGTATAAAATGTCCAGATGGTTCATATTGTC
CAAACTCTGGTATGGCTGCACCTTTTAGTTGTCCACAAGATAAATACTGCACAAATGGTG
CAATATCTCCAGATTCTTGTCAATTGTTTTTCTCCTCAAATTCTGGTTCCTCTGGTTGCT
CTGCAAATAAATGGTTATATATCGTAAGTTTTGGAAGTGCTGCTATCGTTTTAATTGGTA
TTGGTGTAATTTGGAAATATGTTAGTTATAAAAAATCAAAGAAACAAATCGTTAACACTG
AATCAAGCAGACTTATTCCAAAACCAACTGATGGTCCAGAATATGGTGGTTTCTAGGAAA
AAAAAAAAACAAAATCAACTAACTATCCAATAGAATGTAATATTCATTTTTTATTGATTC
AAACCATTTTAATAGAATGGTTATTTCCATTTATTTTAAAAACT
Length of connected seq. 1294
Full length Seq ID -
Full length Seq. -
Length of full length seq. -