NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK129
Library SS
(Link to library)
Clone ID SSK129
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16021-1
Original site URL
Representative seq. ID SSK129Z
(Link to Original site)
Representative DNA sequence 
>SSK129 (SSK129Q) /CSM/SS/SSK1-B/SSK129Q.Seq.d/
XXXXXXXXXXAAATGACTGAAACATCTACTGCTAAAGTTGCCACAACAAAGAAATCAACA
ACTACAAGAAAGCCATTTTCTCTTCAAGGTGTTATTACTCATTCCAGTTCAAGAGCACTA
ATCAAAGCACCAGAAAGATTAGCAGATCAACCACCAGTTGCTTCCAAAGTTGTTCGTAAG
AAATCGACCACGACAGTTAAGCCAACCACTGCAATCAAAAAGAAAGTTGAAAAGAAGAAA
GTTGTTGCATTAAAGAAAACTGCTTCAGCTTCTTCATCTGGTAAAAAAGTTGTCGCCTCA
AAAAAGAAAGTAGTTGCCAAGAAATAAAAAAAAAGGGAAAAATCATTACAGTTTCCATTA
ATTGTACATACATTCAAATATA
sequence update 1998. 2.10
Translated Amino Acid sequence 
---MTETSTAKVATTKKSTTTRKPFSLQGVITHSSSRALIKAPERLADQPPVASKVVRKK
STTTVKPTTAIKKKVEKKKVVALKKTASASSSGKKVVASKKKVVAKK*kkrekslqfpli
vhtfky
Translated Amino Acid sequence (All Frames) 
Frame A:
---nd*niyc*schnkeinnykkaifssrcyysfqfkstnqstrkisrsttscfqscs*e
idhds*anhcnqkes*keesccikencfsffiw*kscrlkkesscqeikkkgkiitvsin
ctyiqi


Frame B:
---MTETSTAKVATTKKSTTTRKPFSLQGVITHSSSRALIKAPERLADQPPVASKVVRKK
STTTVKPTTAIKKKVEKKKVVALKKTASASSSGKKVVASKKKVVAKK*kkrekslqfpli
vhtfky


Frame C:
---*lkhlllklpqqrnqqlqeshflfkvlllipvqeh*skhqkd*qinhqllpklfvrn
rprqlsqplqskrklkrrkllh*rkllqllhlvkklspqkrk*lprnkkkgknhysfh*l
yihsni
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK129 (SSK129Q) /CSM/SS/SSK1-B/SSK129Q.Seq.d/                        684   0.0
SSI620 (SSI620Q) /CSM/SS/SSI6-A/SSI620Q.Seq.d/                        636   0.0
SSG674 (SSG674Q) /CSM/SS/SSG6-D/SSG674Q.Seq.d/                        636   0.0
SSD390 (SSD390Q) /CSM/SS/SSD3-D/SSD390Q.Seq.d/                        636   0.0
FC-BS08 (FC-BS08Q) /CSM/FC/FC-BS/FC-BS08Q.Seq.d/                      628   e-179
SSI349 (SSI349Q) /CSM/SS/SSI3-C/SSI349Q.Seq.d/                        577   e-164
SSI348 (SSI348Q) /CSM/SS/SSI3-B/SSI348Q.Seq.d/                        577   e-164
SSB111 (SSB111Q) /CSM/SS/SSB1-A/SSB111Q.Seq.d/                        559   e-158
SHF779 (SHF779Q) /CSM/SH/SHF7-D/SHF779Q.Seq.d/                        484   e-136
SSG366 (SSG366Q) /CSM/SS/SSG3-C/SSG366Q.Seq.d/                        343   1e-93
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.   250   e-158  7
AP001695|AP001695.1 Homo sapiens genomic DNA, chromosome 21q, section 39/105.    38   0.18   5
AC099148|AC099148.6 Rattus norvegicus clone CH230-66H11, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   0.28   4
AC106388|AC106388.4 Rattus norvegicus clone CH230-141F17, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36   0.33   4
AC095247|AC095247.4 Rattus norvegicus clone CH230-10C6, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46   0.36   1
AC121216|AC121216.4 Rattus norvegicus 4 CH230-220A21 (Children's Hospital Oakland Research Institute) complete sequence.    46   0.36   1
AC087066|AC087066.3 Rattus norvegicus clone RP31-194D8 strain Brown Norway, complete sequence.    46   0.36   1
CK419632|CK419632.1 AUF_IpOva_21_i24 Ovary cDNA library Ictalurus punctatus cDNA 5', mRNA sequence.    36   0.54   2
AC099754|AC099754.2 Homo sapiens chromosome 3 clone RP11-592A5, complete sequence.    32   0.71   2
AC114877|AC114877.2 Homo sapiens chromosome 3 clone CTD-2270K17, complete sequence.    32   0.71   2
dna update 2004. 2.17
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86HQ8) RecName: Full=Uncharacterized protein DDB_G0274469;  &A...    57   3e-07
protein update 2009. 2. 2
PSORT 

 psg: 0.66  gvh: 0.47  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.47  mip: 0.07
 nuc: 0.25  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 40.0 %: nuclear
	 16.0 %: cytoplasmic
	  4.0 %: endoplasmic reticulum

>> prediction for SSK129 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSK129Z
3' end seq. 
>SSK129Z.Seq
----------AAATGACTGAAACATCTACTGCTAAAGTTGCCACAACAAAGAAATCAACA
ACTACAAGAAAGCCATTTTCTCTTCAAGGTGTTATTACTCATTCCAGTTCAAGAGCACTA
ATCAAAGCACCAGAAAGATTAGCAGATCAACCACCAGTTGCTTCCAAAGTTGTTCGTAAG
AAATCGACCACGACAGTTAAGCCAACCACTGCAATCAAAAAGAAAGTTGAAAAGAAGAAA
GTTGTTGCATTAAAGAAAACTGCTTCAGCTTCTTCATCTGGTAAAAAAGTTGTCGCCTCA
AAAAAGAAAGTAGTTGCCAAGAAATAAAAAAAAAGGGAAAAATCATTACAGTTTCCATTA
ATTGTACATACATTCAAATATA
Length of 3' end seq. 372
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -