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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSK118
Library SS
(Link to library)
Clone ID SSK118
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05635-1
Original site URL
Representative seq. ID SSK118E
(Link to Original site)
Representative DNA sequence 
>SSK118 (SSK118Q) /CSM/SS/SSK1-A/SSK118Q.Seq.d/
CTTTTATATTATTACAAAAATATATTTTTAATAATAAAATGTCTTTAGTTCCAAATACAA
TTTGCTTATTTGATGTTGATGGTACATTAACAAAACCAAGAAATGTAATTACACCAGAAA
TGAAAGATTTTTTAGCAGGATTAAGAACCAAAGTTGAATTAGGTGTTGTTGGTGGTTCAG
ATATTAATAAGATTAAAGAACAATTAGGTGAAAATTGTATTAATGAATTCCATTATCTAT
TTGCTGAAAATGGTTTATTATCTTTTAAAGATCATTATTAGCAACTCAAGATATTAAAAA
ATTTTTAGGTGAAGAAAATATTAAAAAGTTTATTAACTTTGTTTTACATTATATCGCTGA
TCTTGATATTCCAATTAAAAGAGGTACTTTTGTTGAATTTAGAAATGGTATGATTAATAT
TTCCCCAATTGGTAGAAATTGTTCACAACAAGAACGTGAAGAATTTGAAAAATATGACTT
GGAACATAAAATTAGACCAACAATGGTATCAATTTTAAAAGAGAAATTCCAATCATTAGG
ATTACAATATTCAATTGGTGGTCAAATTAGTTTTGATGTTTTCCCAATTGGTTGGGATAA
AACTTATTGTTTACGTCATTTACCAGAGGATAAATATAAAACAATTTACTTTTTTGGTGA
TAAAACATTTGTTGGTGGTAATGATTACGGATTACGAAATTGCAAATGATCCAAGAATTA
CAAAATCATTCACAGTTACATCACCAACTGATACTAAAAATTTCCTTTCTGAATTATTTT
ATAAACAATAAATAAATAAATAAATAAAATAAATTAAAAGGTAAAAAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
fyiitkiyf***nvfsskynlli*c*wyinktkkcnytrnerffsriknqs*irccwwfr
y**d*rtir*kly**iplsic*kwfiif*RSLLATQDIKKFLGEENIKKFINFVLHYIAD
LDIPIKRGTFVEFRNGMINISPIGRNCSQQEREEFEKYDLEHKIRPTMVSILKEKFQSLG
LQYSIGGQISFDVFPIGWDKTYCLRHLPEDKYKTIYFFGDKTFVGGNDYGLRNCK*skny
kiihsyitn*y*kfpf*iil*tink*inkin*kvkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
llyyyknifliikcl*fqiqfaylmlmvh*qnqem*lhqk*kif*qd*epkln*vllvvq
ilirlknn*vkivlmnsiiyllkmvyyllkiiisnsry*kifr*rky*kvy*lcftlyr*
s*ysn*kryfc*i*kwyd*yfpnw*klfttrt*ri*ki*lgt*n*tnnginfkreipiir
itifnwwsn*f*cfpnwlg*nllftsftrg*i*nnllfw**nicww**lritklqmiqel
qnhsqlhhqlilkisflnyfinnk*ink*nklkgkkk


Frame B:
fyiitkiyf***nvfsskynlli*c*wyinktkkcnytrnerffsriknqs*irccwwfr
y**d*rtir*kly**iplsic*kwfiif*RSLLATQDIKKFLGEENIKKFINFVLHYIAD
LDIPIKRGTFVEFRNGMINISPIGRNCSQQEREEFEKYDLEHKIRPTMVSILKEKFQSLG
LQYSIGGQISFDVFPIGWDKTYCLRHLPEDKYKTIYFFGDKTFVGGNDYGLRNCK*skny
kiihsyitn*y*kfpf*iil*tink*inkin*kvkkk


Frame C:
fillqkyifnnkmslvpnticlfdvdgtltkprnvitpemkdflaglrtkvelgvvggsd
inkikeqlgencinefhylfaengllsfkdhy*qlkilknf*vkkilkslltlfyiisli
lifqlkevlllnlemv*lifpqlveivhnknvknlknmtwnikldqqwyqf*krnsnh*d
yniqlvvklvlmfsqlvgiklivyviyqrinikqftflvikhllvvmitdyeiandprit
ksftvtsptdtknflselfykq*ink*ik*ikr*kkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK118 (SSK118Q) /CSM/SS/SSK1-A/SSK118Q.Seq.d/                       1546   0.0
VSD154 (VSD154Q) /CSM/VS/VSD1-C/VSD154Q.Seq.d/                        609   e-173
SSD407 (SSD407Q) /CSM/SS/SSD4-A/SSD407Q.Seq.d/                         42   0.013
SSC112 (SSC112Q) /CSM/SS/SSC1-A/SSC112Q.Seq.d/                         40   0.053
VSJ527 (VSJ527Q) /CSM/VS/VSJ5-B/VSJ527Q.Seq.d/                         38   0.21
VHQ431 (VHQ431Q) /CSM/VH/VHQ4-B/VHQ431Q.Seq.d/                         38   0.21
VHQ246 (VHQ246Q) /CSM/VH/VHQ2-B/VHQ246Q.Seq.d/                         38   0.21
VHP816 (VHP816Q) /CSM/VH/VHP8-A/VHP816Q.Seq.d/                         38   0.21
VHJ512 (VHJ512Q) /CSM/VH/VHJ5-A/VHJ512Q.Seq.d/                         38   0.21
VHE722 (VHE722Q) /CSM/VH/VHE7-A/VHE722Q.Seq.d/                         38   0.21
own update 2004. 8. 9
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   268  e-153  12
AX489004|AX489004.1 Sequence 6304 from Patent WO02053728.        117  1e-52  5
M96770|M96770.1 Candida albicans phosphomannmutase (PMM1) gene, complete cds.   117  3e-50  5
AL404665|AL404665.1 T3 end of clone XAT0AA001F10 of library XAT0AA from strain CBS 4311  of Saccharomyces servazzii.    64  1e-15  3
AJ428418|AJ428418.1 Kluyveromyces lactis sec53 gene for phosphomannomutase.    56  1e-15  3
AL439406|AL439406.1 T7 end of clone BD0AA004D06 of library BD0AA from strain CBS 94 of  Candida tropicalis.    84  4e-15  3
AZ545029|AZ545029.1 ENTEK05TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  1e-14  5
AL403593|AL403593.1 T3 end of clone AT0AA009F07 of library AT0AA from strain CBS 4311 of Saccharomyces servazzii.    64  1e-14  2
AL397586|AL397586.1 T7 end of clone AS0AA003H11 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    64  2e-14  4
X03213|X03213.1 Yeast SEC53 gene required for protein assembly in endoplasmic reticulum.    74  1e-12  3
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86B09) RecName: Full=Phosphomannomutase 2;          Short=PMM ...   272   e-108
(Q1W374) RecName: Full=Phosphomannomutase;          EC=5.4.2.8; ...   214   5e-75
(Q1W377) RecName: Full=Phosphomannomutase;          EC=5.4.2.8; ...   207   5e-71
(O80840) RecName: Full=Phosphomannomutase;          Short=AtPMM;...   197   1e-70
(P31353) RecName: Full=Phosphomannomutase;          Short=PMM;  ...   193   3e-70
CP000581_158(CP000581|pid:none) Ostreococcus lucimarinus CCE9901...   199   3e-70
(Q60HD6) RecName: Full=Phosphomannomutase 2;          Short=PMM ...   177   1e-68
AB000703_1(AB000703|pid:none) Fission yeast mRNA for phosphomann...   203   2e-68
(Q9UTJ2) RecName: Full=Phosphomannomutase;          Short=PMM;  ...   203   2e-68
AK312532_1(AK312532|pid:none) Homo sapiens cDNA, FLJ92901, highl...   177   1e-67
protein update 2009. 7. 8
PSORT 

 psg: 0.55  gvh: 0.31  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSK118 is nuc
5' end seq. ID SSK118F
5' end seq. 
>SSK118F.Seq
CTTTTATATTATTACAAAAATATATTTTTAATAATAAAATGTCTTTAGTTCCAAATACAA
TTTGCTTATTTGATGTTGATGGTACATTAACAAAACCAAGAAATGTAATTACACCAGAAA
TGAAAGATTTTTTAGCAGGATTAAGAACCAAAGTTGAATTAGGTGTTGTTGGTGGTTCAG
ATATTAATAAGATTAAAGAACAATTAGGTGAAAATTGTATTAATGAATTCCATTATCTAT
TTGCTGAAAATGGTTTATTATCTTTTAAAGATGGTTCATTATTAGCAACTCAAGATATTA
AAAAATTTTTAGGTGAAGAAAATATTAAAAAGTTTATTAACTTTGTTTTACATTATATCG
CTGATCTTGATATTCCAATTAAAAGAGGTACTTTTGTTGAATTTAGAAATGGTATGATTA
ATATTTCCCCAATTGGTAGAAATTGTTCACAACAAGAACGTGAAGAATTTGAAAAATATG
ACTTGGAACATAAAATTAGACCAACAATGGTATCAATTTTAAAAGAGAAATTCCAATCAT
TAGGATTACAATATTCAATTGGTGGTCAAATTAGTTTTGATGTTTTCCCAATTGGTTGGG
ATAAAACTTATTGTTTACGTCATTTACCAGAGGATAAATATAAAACAATTTACTTTTTTG
GTGATAAAACATTTGTTGGTGGTAATGATTACG----------
Length of 5' end seq. 693
3' end seq. ID SSK118Z
3' end seq. 
>SSK118Z.Seq
----------CATTATTAGCAACTCAAGATATTAAAAAATTTTTAGGTGAAGAAAATATT
AAAAAGTTTATTAACTTTGTTTTACATTATATCGCTGATCTTGATATTCCAATTAAAAGA
GGTACTTTTGTTGAATTTAGAAATGGTATGATTAATATTTCCCCAATTGGTAGAAATTGT
TCACAACAAGAACGTGAAGAATTTGAAAAATATGACTTGGAACATAAAATTAGACCAACA
ATGGTATCAATTTTAAAAGAGAAATTCCAATCATTAGGATTACAATATTCAATTGGTGGT
CAAATTAGTTTTGATGTTTTCCCAATTGGTTGGGATAAAACTTATTGTTTACGTCATTTA
CCAGAGGATAAATATAAAACAATTTACTTTTTTGGTGATAAAACATTTGTTGGTGGTAAT
GATTACGAAATTGCAAATGATCCAAGAATTACAAAATCATTCACAGTTACATCACCAACT
GATACTAAAAATTTCCTTTCTGAATTATTTTATAAACAATAAATAAATAAATAAATAAAA
TAAATTAAAAGGTAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 563
Connected seq. ID SSK118P
Connected seq. 
>SSK118P.Seq
CTTTTATATTATTACAAAAATATATTTTTAATAATAAAATGTCTTTAGTTCCAAATACAA
TTTGCTTATTTGATGTTGATGGTACATTAACAAAACCAAGAAATGTAATTACACCAGAAA
TGAAAGATTTTTTAGCAGGATTAAGAACCAAAGTTGAATTAGGTGTTGTTGGTGGTTCAG
ATATTAATAAGATTAAAGAACAATTAGGTGAAAATTGTATTAATGAATTCCATTATCTAT
TTGCTGAAAATGGTTTATTATCTTTTAAAGATGGTTCATTATTAGCAACTCAAGATATTA
AAAAATTTTTAGGTGAAGAAAATATTAAAAAGTTTATTAACTTTGTTTTACATTATATCG
CTGATCTTGATATTCCAATTAAAAGAGGTACTTTTGTTGAATTTAGAAATGGTATGATTA
ATATTTCCCCAATTGGTAGAAATTGTTCACAACAAGAACGTGAAGAATTTGAAAAATATG
ACTTGGAACATAAAATTAGACCAACAATGGTATCAATTTTAAAAGAGAAATTCCAATCAT
TAGGATTACAATATTCAATTGGTGGTCAAATTAGTTTTGATGTTTTCCCAATTGGTTGGG
ATAAAACTTATTGTTTACGTCATTTACCAGAGGATAAATATAAAACAATTTACTTTTTTG
GTGATAAAACATTTGTTGGTGGTAATGATTACG----------CATTATTAGCAACTCAA
GATATTAAAAAATTTTTAGGTGAAGAAAATATTAAAAAGTTTATTAACTTTGTTTTACAT
TATATCGCTGATCTTGATATTCCAATTAAAAGAGGTACTTTTGTTGAATTTAGAAATGGT
ATGATTAATATTTCCCCAATTGGTAGAAATTGTTCACAACAAGAACGTGAAGAATTTGAA
AAATATGACTTGGAACATAAAATTAGACCAACAATGGTATCAATTTTAAAAGAGAAATTC
CAATCATTAGGATTACAATATTCAATTGGTGGTCAAATTAGTTTTGATGTTTTCCCAATT
GGTTGGGATAAAACTTATTGTTTACGTCATTTACCAGAGGATAAATATAAAACAATTTAC
TTTTTTGGTGATAAAACATTTGTTGGTGGTAATGATTACGAAATTGCAAATGATCCAAGA
ATTACAAAATCATTCACAGTTACATCACCAACTGATACTAAAAATTTCCTTTCTGAATTA
TTTTATAAACAATAAATAAATAAATAAATAAAATAAATTAAAAGGTAAAAAAAAAAAAAA
AAAAAA
Length of connected seq. 1256
Full length Seq ID SSK118E
Full length Seq. 
>SSK118E.Seq
CTTTTATATTATTACAAAAATATATTTTTAATAATAAAATGTCTTTAGTTCCAAATACAA
TTTGCTTATTTGATGTTGATGGTACATTAACAAAACCAAGAAATGTAATTACACCAGAAA
TGAAAGATTTTTTAGCAGGATTAAGAACCAAAGTTGAATTAGGTGTTGTTGGTGGTTCAG
ATATTAATAAGATTAAAGAACAATTAGGTGAAAATTGTATTAATGAATTCCATTATCTAT
TTGCTGAAAATGGTTTATTATCTTTTAAAGATCATTATTAGCAACTCAAGATATTAAAAA
ATTTTTAGGTGAAGAAAATATTAAAAAGTTTATTAACTTTGTTTTACATTATATCGCTGA
TCTTGATATTCCAATTAAAAGAGGTACTTTTGTTGAATTTAGAAATGGTATGATTAATAT
TTCCCCAATTGGTAGAAATTGTTCACAACAAGAACGTGAAGAATTTGAAAAATATGACTT
GGAACATAAAATTAGACCAACAATGGTATCAATTTTAAAAGAGAAATTCCAATCATTAGG
ATTACAATATTCAATTGGTGGTCAAATTAGTTTTGATGTTTTCCCAATTGGTTGGGATAA
AACTTATTGTTTACGTCATTTACCAGAGGATAAATATAAAACAATTTACTTTTTTGGTGA
TAAAACATTTGTTGGTGGTAATGATTACGGATTACGAAATTGCAAATGATCCAAGAATTA
CAAAATCATTCACAGTTACATCACCAACTGATACTAAAAATTTCCTTTCTGAATTATTTT
ATAAACAATAAATAAATAAATAAATAAAATAAATTAAAAGGTAAAAAAAAAAA
Length of full length seq. 833