>SSJ884 (SSJ884Q) /CSM/SS/SSJ8-D/SSJ884Q.Seq.d/
ATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGAAAAT
TTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAA
CCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATA
AGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGA
AATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATA
AGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATG
CAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACA
GATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAAC
AATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTT
TAAAAAAATTTAAATAXXXXXXXXXX

*n*KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDK
DGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDA
IAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsfl
kkfk---

Frame A:
ikikkwivqlqkm*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqclflliri
rmelfq*krfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*iktiqm
qllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf
*knln---


Frame B:
lklknglcnykrcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**g*
gwnyfnkrdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrc
ncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiifif
kki*---


Frame C:
*n*KMDCAITKDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDK
DGIISIKEIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDA
IAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsfl
kkfk---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                       1072   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                       1072   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                       1072   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                       1072   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                       1072   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                       1072   0.0
SSJ884 (SSJ884Q) /CSM/SS/SSJ8-D/SSJ884Q.Seq.d/                       1072   0.0
SSI208 (SSI208Q) /CSM/SS/SSI2-A/SSI208Q.Seq.d/                       1072   0.0
SSH153 (SSH153Q) /CSM/SS/SSH1-C/SSH153Q.Seq.d/                       1072   0.0
SSG852 (SSG852Q) /CSM/SS/SSG8-C/SSG852Q.Seq.d/                       1072   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   1068   0.0    1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   991   0.0    5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   2e-05  16
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    36   2e-04  12
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   7e-04  19
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38   0.001  12
AX345516|AX345516.1 Sequence 587 from Patent WO0200928.            32   0.002  6
AP003360|AP003360.2 Staphylococcus aureus subsp. aureus Mu50 genomic DNA, complete sequence, section 3/9.    34   0.003  11
AE010589|AE010589.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 131 of 197 of the complete genome.    34   0.004  5
AR271569|AR271569.1 Sequence 1 from patent US 6503729.             32   0.004  21

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   6e-14
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    69   7e-11
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   9e-11
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   9e-11
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    67   3e-10
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     67   3e-10
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   3e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   8e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   1e-06
FN357341_31(FN357341|pid:none) Schistosoma mansoni genome sequen...    55   1e-06

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSJ884 is nuc

>SSJ884F.Seq
ATTAAAATTAAAAAATGGATTGTGCAATTACAAAAGATGTAGAGGATATGTTAAGAAAAT
TTGATTCAAATGGTGATGGTAATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAA
CCGGTTCAAAAGATCCATTACGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATA
AGGATGGAATTATTTCAATAAAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGA
AATTGCAAAAGGCAATTAACAACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATA
AGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATG
CAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACA
GATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAAC
AATAAATAATTTATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTT
TAAAAAAATTTAAATA----------