SSJ827
Library SS
(Link to library)
Clone ID SSJ827
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13958-1
Original site URL
Representative seq. ID SSJ827F
(Link to Original site)
Representative DNA sequence
>SSJ827 (SSJ827Q) /CSM/SS/SSJ8-B/SSJ827Q.Seq.d/
GTAATTATTTCACCAATGTTAGAGAGAGATGATGTTCATGCAAGTACAATTCATAATACT
GCCGTTGTAGTTGGTAATAATGGTAATATCATTGGAAATAGTAGAAAGAATCATATCCCA
AGAACTGGTGATTTCAATGAGTCAACCTATTATATGGAATCGACATTGGGTCATCCAGTG
TTTGAGACTATTTATGGAAAGATTGCAATCAACATTTGTTATGGTCGTCATCATAATTTG
AATTGGTTAGCCTATGGTTTGAATGGTGCTGAAATCGTTTTTAATCCATCCGCTACCGTG
GGTGAATTATCTGAACCAATGTGGGGTGTCGAAGCTAGAAATGCAGCAATGACCAATAAC
TATTTCGTTGGTTCAATCAATCGTGTTGGAACTGAACATTTCCCAAATGAATTCACCAGT
GGTAATGGTAAACCTGCTCATAAAGATTTCGGTCATTTCTATGGTAGTTCTTATTTCAGT
TCACCTGATAATTGTTGTACTCCTTCACTCTCTCGTGTCTCTGATGGTTTAAATATCTCT
GAAGTCGACTTAAACCTTTGTCAACAAGTAAAAGATAAATGGAATTTCCAAATGACTGCT
CGTTATGAATTATACGCAAAATTCTTAACAGATTACATTAATCCAAATTATCAACCAAAT
ATTATTAAAGXXXXXXXXXX
sequence update 1998.11.17
Translated Amino Acid sequence
VIISPMLERDDVHASTIHNTAVVVGNNGNIIGNSRKNHIPRTGDFNESTYYMESTLGHPV
FETIYGKIAINICYGRHHNLNWLAYGLNGAEIVFNPSATVGELSEPMWGVEARNAAMTNN
YFVGSINRVGTEHFPNEFTSGNGKPAHKDFGHFYGSSYFSSPDNCCTPSLSRVSDGLNIS
EVDLNLCQQVKDKWNFQMTARYELYAKFLTDYINPNYQPNIIK---


Translated Amino Acid sequence (All Frames)
Frame A:
VIISPMLERDDVHASTIHNTAVVVGNNGNIIGNSRKNHIPRTGDFNESTYYMESTLGHPV
FETIYGKIAINICYGRHHNLNWLAYGLNGAEIVFNPSATVGELSEPMWGVEARNAAMTNN
YFVGSINRVGTEHFPNEFTSGNGKPAHKDFGHFYGSSYFSSPDNCCTPSLSRVSDGLNIS
EVDLNLCQQVKDKWNFQMTARYELYAKFLTDYINPNYQPNIIK---


Frame B:
*lfhqc*remmfmqvqfiilpl*lvimvisleiveriisqelvismsqpiiwnrhwviqc
lrlfmerlqstfvmvviii*ig*pmv*mvlksflihplpwvnylnqcgvsklemqq*pit
islvqsivlelnisqmnspvvmvnllikisvismvvlisvhliivvllhslvslmv*isl
kst*tfvnk*kingisk*llvmnytqns*qitliqiinqill---


Frame C:
nyftnvrer*csckyns*ycrcsw**w*yhwk**kesypknw*fq*vnllygidigsssv
*dylwkdcnqhllwsss*felvslwfewc*nrf*siryrg*ii*tnvgcrs*kcsndq*l
frwfnqscwn*tfpk*ihqw*w*tcs*rfrsflw*flfqft**llysftlscl*wfkyl*
srlkplstskr*mefpndcsl*iirkilnrlh*sklstkyy*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ827 (SSJ827Q) /CSM/SS/SSJ8-B/SSJ827Q.Seq.d/ 1328 0.0
SSK858 (SSK858Q) /CSM/SS/SSK8-C/SSK858Q.Seq.d/ 1166 0.0
SSG647 (SSG647Q) /CSM/SS/SSG6-B/SSG647Q.Seq.d/ 1039 0.0
SLE886 (SLE886Q) /CSM/SL/SLE8-D/SLE886Q.Seq.d/ 918 0.0
SHG404 (SHG404Q) /CSM/SH/SHG4-A/SHG404Q.Seq.d/ 38 0.17
VSC573 (VSC573Q) /CSM/VS/VSC5-D/VSC573Q.Seq.d/ 36 0.67
SFF267 (SFF267Q) /CSM/SF/SFF2-C/SFF267Q.Seq.d/ 36 0.67
CFJ759 (CFJ759Q) /CSM/CF/CFJ7-C/CFJ759Q.Seq.d/ 36 0.67
AFO804 (AFO804Q) /CSM/AF/AFO8-A/AFO804Q.Seq.d/ 36 0.67
AFD451 (AFD451Q) /CSM/AF/AFD4-C/AFD451Q.Seq.d/ 36 0.67

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF333186|AF333186.1 Dictyostelium discoideum beta-alanine synthase (pyd3) mRNA, complete cds. 1320 0.0 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 1320 0.0 1
CF833901|CF833901.1 UCRCS02_04H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04H21, mRNA sequence. 74 1e-25 4
CF833900|CF833900.1 UCRCS02_04H21_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa04H21, mRNA sequence. 66 3e-23 4
BI122113|BI122113.1 I002P54P Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA, mRNA sequence. 50 2e-19 5
CK103875|CK103875.1 I002P54.5pR Populus senescing leaves cDNA library Populus tremula cDNA clone I002P54 5', mRNA sequence. 50 2e-17 5
BM187707|BM187707.1 saj88a10.y1 Gm-c1074 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1074-3499 5' similar to TR:Q9VI04 Q9VI04 CG3027 PROTEIN. ;, mRNA sequence. 52 4e-15 4
BU761113|BU761113.1 sas63c05.y1 Gm-c1023 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1023-5481 5' similar to TR:Q9VI04 Q9VI04 CG3027 PROTEIN. ;, mRNA sequence. 52 1e-12 3
BM528615|BM528615.1 sal59d10.y1 Gm-c1061 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1061-3260 5' similar to TR:Q9VI04 Q9VI04 CG3027 PROTEIN. ;, mRNA sequence. 52 1e-12 3
CF808914|CF808914.1 psHB040xN09f USDA-IFAFS:Expression of Phytophthora sojae genes during infection and propagation Phytophthora sojae cDNA clone sHB040N09 5, mRNA sequence. 52 2e-12 3
dna update 2004. 2.17
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q964D8) RecName: Full=Beta-ureidopropionase; EC=3.5.1.... 412 e-114
DQ023230_1(DQ023230|pid:none) Thlaspi caerulescens beta-ureidopr... 311 1e-83
AM449079_1(AM449079|pid:none) Vitis vinifera contig VV78X033524.... 311 1e-83
AF465754_1(AF465754|pid:none) Arabidopsis thaliana N-carbamyl-be... 311 1e-83
AB008268_20(AB008268|pid:none) Arabidopsis thaliana genomic DNA,... 311 1e-83
AK060443_1(AK060443|pid:none) Oryza sativa Japonica Group cDNA c... 310 2e-83
EF677177_1(EF677177|pid:none) Picea sitchensis clone WS02763_C11... 305 6e-82
CP001324_691(CP001324|pid:none) Micromonas sp. RCC299 chromosome... 300 3e-80
T16068(T16068) hypothetical protein F13H8.7 - Caenorhabditis ele... 290 2e-77
BC160511_1(BC160511|pid:none) Xenopus tropicalis hypothetical pr... 290 3e-77
protein update 2009. 6.14
PSORT

psg: 0.75 gvh: 0.34 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.25 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for SSJ827 is cyt

5' end seq. ID SSJ827F
5' end seq.
>SSJ827F.Seq
GTAATTATTTCACCAATGTTAGAGAGAGATGATGTTCATGCAAGTACAATTCATAATACT
GCCGTTGTAGTTGGTAATAATGGTAATATCATTGGAAATAGTAGAAAGAATCATATCCCA
AGAACTGGTGATTTCAATGAGTCAACCTATTATATGGAATCGACATTGGGTCATCCAGTG
TTTGAGACTATTTATGGAAAGATTGCAATCAACATTTGTTATGGTCGTCATCATAATTTG
AATTGGTTAGCCTATGGTTTGAATGGTGCTGAAATCGTTTTTAATCCATCCGCTACCGTG
GGTGAATTATCTGAACCAATGTGGGGTGTCGAAGCTAGAAATGCAGCAATGACCAATAAC
TATTTCGTTGGTTCAATCAATCGTGTTGGAACTGAACATTTCCCAAATGAATTCACCAGT
GGTAATGGTAAACCTGCTCATAAAGATTTCGGTCATTTCTATGGTAGTTCTTATTTCAGT
TCACCTGATAATTGTTGTACTCCTTCACTCTCTCGTGTCTCTGATGGTTTAAATATCTCT
GAAGTCGACTTAAACCTTTGTCAACAAGTAAAAGATAAATGGAATTTCCAAATGACTGCT
CGTTATGAATTATACGCAAAATTCTTAACAGATTACATTAATCCAAATTATCAACCAAAT
ATTATTAAAG----------
Length of 5' end seq. 670
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -