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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ813
Library SS
(Link to library)
Clone ID SSJ813
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04591-1
Original site URL
Representative seq. ID SSJ813E
(Link to Original site)
Representative DNA sequence 
>SSJ813 (SSJ813Q) /CSM/SS/SSJ8-A/SSJ813Q.Seq.d/
AAATTAAATTGCAATTGTGGGATACTGCAGGTCAAGAAAGATTTAGATCATTAATTCCAT
CTTATATTAGAGATTCTTCTGTTGCTATAGTAGTTTATGATATTACAAATAAAGTTTCAT
TTACAAATACAATAAAATGGATTGAAGATGTTAGAAATGAAAGAGGAAACAATGTAGTAA
TAATGTTGGTAGGAAATAAAACTGATTTAGCAGATAAAAGACAGGTTTCAATTGAAGAAG
GTGAAGCAAAAGCAAAGGAATATGATATTATGTTTACAGAGACATCAGCAAAAGCAGGTT
TTAATATTAAAGCATTATTTAGAAAAGTTGCATCAGCGTTACCAGGTATTGATTCAAATT
CAATGACAAAGAATCAACATGAGATCATCTCTGAAGTCGATATTACAGATGGTGGTAAAC
CAGCCTTAAAAGAGGATTTTNTAGTTCATCAAGATNTTAAATNTAAATTAATTTTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAACAAACTA
TACATAATTCACTTTTTTTTTTTTTTATTAAAATAAACAATAAATTAATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
IKLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVI
MLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNS
MTKNQHEIISEVDITDGGKPALKEDFXVHQDXKXKLIF*kkkkkkkkkkekkkkekkqti
hnslffffikinnklikkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
klncncgilqvkkdldh*fhlileillll**fmilqikfhlqiq*nglkmlemkeetm**
*cw*eikli*qikdrfqlkkvkqkqrnmilclqrhqqkqvlilkhyleklhqryqvliqi
q*qrinmrsslksilqmvvnqp*krix*fikxlnxn*ffkkkkkkkkkkkkkkkkkknkl
yiihffffllk*tin*lkkkkkkkkkkkkk


Frame B:
n*iaivgycrsrki*iinsily*rffccyssl*yyk*sfiykynkmd*rc*k*krkqcsn
nvgrk*n*fsr*ktgfn*rr*skskgi*yyvyrdisksrf*y*sii*kscisvtry*fkf
ndkest*dhl*sryyrww*tslkrgfxsssrx*x*inflkkkkkkkkkkrkkkkrkktny
t*ftffffy*nkq*in*kkkkkkkkkkkkk


Frame C:
IKLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDITNKVSFTNTIKWIEDVRNERGNNVVI
MLVGNKTDLADKRQVSIEEGEAKAKEYDIMFTETSAKAGFNIKALFRKVASALPGIDSNS
MTKNQHEIISEVDITDGGKPALKEDFXVHQDXKXKLIF*kkkkkkkkkkekkkkekkqti
hnslffffikinnklikkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ813 (SSJ813Q) /CSM/SS/SSJ8-A/SSJ813Q.Seq.d/                        928   0.0
SSL860 (SSL860Q) /CSM/SS/SSL8-C/SSL860Q.Seq.d/                        852   0.0
SSJ223 (SSJ223Q) /CSM/SS/SSJ2-A/SSJ223Q.Seq.d/                        833   0.0
SSB705 (SSB705Q) /CSM/SS/SSB7-A/SSB705Q.Seq.d/                        729   0.0
SSK838 (SSK838Q) /CSM/SS/SSK8-B/SSK838Q.Seq.d/                        553   e-156
SSE369 (SSE369Q) /CSM/SS/SSE3-C/SSE369Q.Seq.d/                        420   e-116
VSK285 (VSK285Q) /CSM/VS/VSK2-D/VSK285Q.Seq.d/                         70   4e-11
SSI654 (SSI654Q) /CSM/SS/SSI6-C/SSI654Q.Seq.d/                         68   2e-10
SSA604 (SSA604Q) /CSM/SS/SSA6-A/SSA604Q.Seq.d/                         68   2e-10
VSE476 (VSE476Q) /CSM/VS/VSE4-D/VSE476Q.Seq.d/                         62   1e-08
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM162871|BM162871.1 EST565394 PyBS Plasmodium yoelii yoelii cDNA clone PYCKY01 5' end, mRNA sequence.    68  2e-14  3
BM163723|BM163723.1 EST566246 PyBS Plasmodium yoelii yoelii cDNA clone PYCLI80 5' end, mRNA sequence.    68  3e-14  3
AZ545916|AZ545916.1 ENTES12TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    70  7e-14  3
BH166367|BH166367.1 ENTQX24TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    70  8e-14  3
X59598|X59598.1 S.cerevisiae YPT6 gene.                           70  7e-13  2
CB603415|CB603415.1 L3593 Late-oocyst subtraction library Plasmodium berghei/Anopheles stephensi mixed EST library cDNA clone L3593, mRNA sequence.    58  5e-12  3
BF296331|BF296331.1 035PbE08 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    58  7e-12  3
BF295792|BF295792.1 028PbD04 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    58  8e-12  3
U17244|U17244.1 Saccharomyces cerevisiae chromosome XII cosmid 8479.    70  1e-11  2
AZ528431|AZ528431.1 ENTBK77TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    62  1e-11  3
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55FK2) RecName: Full=Ras-related protein Rab-6;                     281   1e-74
EF084401_1(EF084401|pid:none) Picea sitchensis clone WS02712_B09...   195   8e-49
AF228419_1(AF228419|pid:none) Toxoplasma gondii RAB6 protein (Ra...   194   2e-48
AL360334_3(AL360334|pid:none) Arabidopsis thaliana DNA chromosom...   194   2e-48
BT020541_1(BT020541|pid:none) Arabidopsis thaliana At5g10260 gen...   194   2e-48
DQ311397_1(DQ311397|pid:none) Bombyx mori ras small monomeric GT...   192   7e-48
BC157379_1(BC157379|pid:none) Danio rerio RAB6A, member RAS onco...   192   7e-48
BT044916_1(BT044916|pid:none) Salmo salar clone ssal-rgf-507-079...   191   1e-47
(P20340) RecName: Full=Ras-related protein Rab-6A;          Shor...   191   1e-47
BT041134_1(BT041134|pid:none) Zea mays full-length cDNA clone ZM...   191   2e-47
protein update 2009. 7. 8
PSORT 

 psg: 0.45  gvh: 0.31  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSJ813 is cyt
5' end seq. ID SSJ813F
5' end seq. 
>SSJ813F.Seq
AAATTAAATTGCAATTGTGGGATACTGCAGGTCAAGAAAGATTTAGATCATTAATTCCAT
CTTATATTAGAGATTCTTCTGTTGCTATAGTAGTTTATGATATTACAAATAAAGTTTCAT
TTACAAATACAATAAAATGGATTGAAGATGTTAGAAATGAAAGAGGAAACAATGTAGTAA
TAATGTTGGTAGGAAATAAAACTGATTTAGCAGATAAAAGACAGGTTTCAATTGAAGAAG
GTGAAGCAAAAGCAAAGGAATATGATATTATGTTTACAGAGACATCAGCAAAAGCAGGTT
TTAATATTAAAGCATTATTTAGAAAAGTTGCATCAGCGTTACCAGGTATTGATTCAAATT
CAATGACAAAGAATCAACATGAGATCATCTCTGAAGTCGATATTACAGATGGTGGTAAAC
CAGCCTTAAAAGAAGGTGATGGATTTTGTAGTTCATCAAGATGTTAAATATAAATTAATT
TTTTAAAAAAAAA----------
Length of 5' end seq. 493
3' end seq. ID SSJ813Z
3' end seq. 
>SSJ813Z.Seq
----------GGATTTTTTAGTTCATCAAGATTTTAAATTTAAATTAATTTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAACAAACTATACA
TAATTCACTTTTTTTTTTTTTTATTAAAATAAACAATAAATTAATTAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 200
Connected seq. ID SSJ813P
Connected seq. 
>SSJ813P.Seq
AAATTAAATTGCAATTGTGGGATACTGCAGGTCAAGAAAGATTTAGATCATTAATTCCAT
CTTATATTAGAGATTCTTCTGTTGCTATAGTAGTTTATGATATTACAAATAAAGTTTCAT
TTACAAATACAATAAAATGGATTGAAGATGTTAGAAATGAAAGAGGAAACAATGTAGTAA
TAATGTTGGTAGGAAATAAAACTGATTTAGCAGATAAAAGACAGGTTTCAATTGAAGAAG
GTGAAGCAAAAGCAAAGGAATATGATATTATGTTTACAGAGACATCAGCAAAAGCAGGTT
TTAATATTAAAGCATTATTTAGAAAAGTTGCATCAGCGTTACCAGGTATTGATTCAAATT
CAATGACAAAGAATCAACATGAGATCATCTCTGAAGTCGATATTACAGATGGTGGTAAAC
CAGCCTTAAAAGAAGGTGATGGATTTTGTAGTTCATCAAGATGTTAAATATAAATTAATT
TTTTAAAAAAAAA----------GGATTTTTTAGTTCATCAAGATTTTAAATTTAAATTA
ATTTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAA
AACAAACTATACATAATTCACTTTTTTTTTTTTTTATTAAAATAAACAATAAATTAATTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 693
Full length Seq ID SSJ813E
Full length Seq. 
>SSJ813E.Seq
AAATTAAATTGCAATTGTGGGATACTGCAGGTCAAGAAAGATTTAGATCATTAATTCCAT
CTTATATTAGAGATTCTTCTGTTGCTATAGTAGTTTATGATATTACAAATAAAGTTTCAT
TTACAAATACAATAAAATGGATTGAAGATGTTAGAAATGAAAGAGGAAACAATGTAGTAA
TAATGTTGGTAGGAAATAAAACTGATTTAGCAGATAAAAGACAGGTTTCAATTGAAGAAG
GTGAAGCAAAAGCAAAGGAATATGATATTATGTTTACAGAGACATCAGCAAAAGCAGGTT
TTAATATTAAAGCATTATTTAGAAAAGTTGCATCAGCGTTACCAGGTATTGATTCAAATT
CAATGACAAAGAATCAACATGAGATCATCTCTGAAGTCGATATTACAGATGGTGGTAAAC
CAGCCTTAAAAGAGGATTTTNTAGTTCATCAAGATNTTAAATNTAAATTAATTTTTTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGAAAAAAAACAAACTA
TACATAATTCACTTTTTTTTTTTTTTATTAAAATAAACAATAAATTAATTAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 631