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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ719
Library SS
(Link to library)
Clone ID SSJ719
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U05597-1
Original site URL
Representative seq. ID SSJ719E
(Link to Original site)
Representative DNA sequence 
>SSJ719 (SSJ719Q) /CSM/SS/SSJ7-A/SSJ719Q.Seq.d/
AAGAAACAATAGATAGAGGAATAAATTTTGATAATGTAAGTAATTTAGATGAACAATTAT
TTGAAATTGAATGTCAAAGAGAAGAGAATAGACAAGAAAAAGAGAAAATAAAATTTGAAG
AACAAAGAATTCAATTAAAAGAAAAAGAATTAAATGAAAAAGAATTTAGATTGGATGAAA
AGGAATTTGAAATTGAGGATGAAAAAGAAAAACTTAGACAATTGGCAGTGGAATTAAATC
AAACAGTTTCAGAGATTGAAATTAAAACTAAACAATTGGAAGATAAAGAAAAGGAATTAG
AAATATCACAAAAGAAATATTTAGAAAAGAAAAAACAATTACTTGAATTTGAACAACAAT
TAAAACAAAGAGAACATGATTTAAAATTTTCAGAATTAACTTCATTACAATCTTCTTTAC
AACAACCAATTCAACCAATTCAAACAATCCAACCACAACNAATAATTCAACAATCACCAC
GTGCACTTAAACNGNGAAAATCAATTGCTCCAAGAATGTCAGTTTTATCGTCATCGTCAT
CAATATCATCATCATCATCATCAACTGTTTCGAAAATACCAAGAAAATCATTAATACCAC
CAACTTCAACAAAAGAAAATATACCAAATTCATCCTTTTCATCAACACAATCAAGTTTAA
AATCAAAAATTCCACAAAGACGTCCAACAATTTTAGTTTCATCCATCAATAGTAATAGTA
GCGGTGGTATTAGTCAAAACTAAAAAAAAAAAAAAAAAAAACAAACAAATAAATAAATAA
ATATTTAATGATAATAATAAAAAAAATCAATAAAATTGTATAAATCCA
sequence update 1999. 6.23
Translated Amino Acid sequence 
ETIDRGINFDNVSNLDEQLFEIECQREENRQEKEKIKFEEQRIQLKEKELNEKEFRLDEK
EFEIEDEKEKLRQLAVELNQTVSEIEIKTKQLEDKEKELEISQKKYLEKKKQLLEFEQQL
KQREHDLKFSELTSLQSSLQQPIQPIQTIQPQXIIQQSPRALKXXKSIAPRMSVLSSSSS
ISSSSSSTVSKIPRKSLIPPTSTKENIPNSSFSSTQSSLKSKIPQRRPTILVSSINSNSS
GGISQN*kkkkkkqtnk*ini*****kksiklyks
Translated Amino Acid sequence (All Frames) 
Frame A:
kkq*iee*ilim*vi*mnnylklnvkekridkkkrk*nlknkefn*kkkn*mkknldwmk
rnlklrmkkknldnwqwn*ikqfqrlklklnnwkikkrn*kyhkrni*krknnylnlnnn
*nkenmi*nfqn*lhynllynnqfnqfkqsnhnx*fnnhhvhlnxenqllqecqfyrhrh
qyhhhhhqlfrkyqenh*yhqlqqkkiyqihpfhqhnqv*nqkfhkdvqqf*fhpsiviv
avvlvktkkkkkknkqink*ifndnnkknq*ncinp


Frame B:
rnnr*rnkf**ck*fr*tii*n*mskrre*trkrenki*rtknsikrkrik*kri*ig*k
gi*n*g*krkt*tigsgiksnsfrd*n*n*tigr*rkgirnitkeifrkektit*i*tti
ktkrt*fkifrinfitifftttnstnsnnptttnnstittct*txkincsknvsfivivi
niiiiiincfentkkiinttnfnkrkytkfilfintikfkiknstktsnnfsfihq****
rwy*sklkkkkkktnk*inkylmiiikkinkiv*i


Frame C:
ETIDRGINFDNVSNLDEQLFEIECQREENRQEKEKIKFEEQRIQLKEKELNEKEFRLDEK
EFEIEDEKEKLRQLAVELNQTVSEIEIKTKQLEDKEKELEISQKKYLEKKKQLLEFEQQL
KQREHDLKFSELTSLQSSLQQPIQPIQTIQPQXIIQQSPRALKXXKSIAPRMSVLSSSSS
ISSSSSSTVSKIPRKSLIPPTSTKENIPNSSFSSTQSSLKSKIPQRRPTILVSSINSNSS
GGISQN*kkkkkkqtnk*ini*****kksiklyks
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ719 (SSJ719Q) /CSM/SS/SSJ7-A/SSJ719Q.Seq.d/                        353   3e-96
SLH819 (SLH819Q) /CSM/SL/SLH8-A/SLH819Q.Seq.d/                         40   0.053
SHA222 (SHA222Q) /CSM/SH/SHA2-A/SHA222Q.Seq.d/                         38   0.21
AHM332 (AHM332Q) /CSM/AH/AHM3-B/AHM332Q.Seq.d/                         38   0.21
VHL609 (VHL609Q) /CSM/VH/VHL6-A/VHL609Q.Seq.d/                         36   0.82
VHD545 (VHD545Q) /CSM/VH/VHD5-B/VHD545Q.Seq.d/                         36   0.82
VFN250 (VFN250Q) /CSM/VF/VFN2-C/VFN250Q.Seq.d/                         36   0.82
VFH630 (VFH630Q) /CSM/VF/VFH6-B/VFH630Q.Seq.d/                         36   0.82
VFE303 (VFE303Q) /CSM/VF/VFE3-A/VFE303Q.Seq.d/                         36   0.82
VFE195 (VFE195Q) /CSM/VF/VFE1-D/VFE195Q.Seq.d/                         36   0.82
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    36  0.12  8
AC125079|AC125079.2 Mus musculus chromosome UNK clone RP23-480M17, WORKING DRAFT SEQUENCE, 21 unordered pieces.    42  0.21  3
AP004174|AP004174.1 Mycoplasma penetrans genomic DNA, complete sequence, section 5/5.    40  0.44  6
CA411899|CA411899.1 UI-H-EZ0-bak-k-20-0-UI.s1 NCI_CGAP_Ch1 Homo sapiens cDNA clone UI-H-EZ0-bak-k-20-0-UI 3', mRNA sequence.    40  0.82  2
AP003187|AP003187.2 Clostridium perfringens DNA, complete genome, section 3/10.    38  1.0  7
AC116963|AC116963.1 Dictyostelium discoideum chromosome 2 map 4790445-4846595 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    38  1.1  3
AJ238883|AJ238883.1 Dictyostelium discoideum mRNA for guanylyl cyclase.    38  1.3  2
BP132694|BP132694.1 Nicotiana tabacum cDNA, clone: BY4882, primer: M13 forward, sequence 1.    30  2.4  3
BX470099|BX470099.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  2.6  3
BX510323|BX510323.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-266F12.    44  2.8  1
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    50   1e-04
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    49   2e-04
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    49   2e-04
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    49   2e-04
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    48   4e-04
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    45   0.004
CP000682_760(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    43   0.011
CP001291_4282(CP001291|pid:none) Cyanothece sp. PCC 7424, comple...    41   0.042
AE016825_1579(AE016825|pid:none) Chromobacterium violaceum ATCC ...    39   0.27
AE014186_259(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.27
protein update 2009. 7. 8
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSJ719 is nuc
5' end seq. ID SSJ719F
5' end seq. 
>SSJ719F.Seq
AAGAAACAATAGATAGAGGAATAAATTTTGATAATGTAAGTAATTTAGATGAACAATTAT
TTGAAATTGAATGTCAAAGAGAAGAGAATAGACAAGAAAAAGAGAAAATAAAATTTGAAG
AACAAAGAATTCAATTAAAAGAAAAAGAATTAAATGAAAAAGAATTTAGATTGGATGAAA
AGGAATTTGAAATTGAGGATGAAAAAGAAAAACTTAGACAATTGGCAGTGGAATTAAATC
AAACAGTTTCAGAGATTGAAATTAAAACTAAACAATTGGAAGATAAAGAAAAGGAATTAG
AAATATCACAAAAGAAATATTTAGAAAAGAAAAAACAATTACTTGAATTTGAACAACAAT
TAAAACAAAGAGAACATGATTTAAAATTTTCAGAATTAACTTCATTACAATCTTCTTTAC
AACAACCAATTCAACCAATTCAAACAATCCAACCACAACAAATAATTCAACAATCACCAC
GTGCACTTAAACTGTGAAAATCAATTGCTCCAAGAATGTCAGTTTTATCGTCATCGTCAT
CAATATCATCATCATCATCATCAACTGTTTCGAAAATACCAAGAAAATCATTAATACCAC
C----------
Length of 5' end seq. 601
3' end seq. ID SSJ719Z
3' end seq. 
>SSJ719Z.Seq
----------GCAGTGGAATTAAATCAAACAGTTTCAGAGATTGAAATTAAAACTAAACA
ATTGGAAGATAAAGAAAAGGAATTAGAAATATCACAAAAGAAATATTTAGAAAAGAAAAA
ACAATTACTTGAATTTGAACAACAATTAAAACAAAGAGAACATGATTTAAAATTTTCAGA
ATTAACTTCATTACAATCTTCTTTACAACAACCAATTCAACCAATTCAAACAATCCAACC
ACAACCAATAATTCAACAATCACCACGTGCACTTAAACAGAGAAAATCAATTGCTCCAAG
AATGTCAGTTTTATCGTCATCGTCATCAATATCATCATCATCATCATCAACTGTTTCGAA
AATACCAAGAAAATCATTAATACCACCAACTTCAACAAAAGAAAATATACCAAATTCATC
CTTTTCATCAACACAATCAAGTTTAAAATCAAAAATTCCACAAAGACGTCCAACAATTTT
AGTTTCATCCATCAATAGTAATAGTAGCGGTGGTATTAGTCAAAACTAAAAAAAAAAAAA
AAAAAAACAAACAAATAAATAAATAAATATTTAATGATAATAATAAAAAAAATCAATAAA
ATTGTATAAATCCA
Length of 3' end seq. 604
Connected seq. ID SSJ719P
Connected seq. 
>SSJ719P.Seq
AAGAAACAATAGATAGAGGAATAAATTTTGATAATGTAAGTAATTTAGATGAACAATTAT
TTGAAATTGAATGTCAAAGAGAAGAGAATAGACAAGAAAAAGAGAAAATAAAATTTGAAG
AACAAAGAATTCAATTAAAAGAAAAAGAATTAAATGAAAAAGAATTTAGATTGGATGAAA
AGGAATTTGAAATTGAGGATGAAAAAGAAAAACTTAGACAATTGGCAGTGGAATTAAATC
AAACAGTTTCAGAGATTGAAATTAAAACTAAACAATTGGAAGATAAAGAAAAGGAATTAG
AAATATCACAAAAGAAATATTTAGAAAAGAAAAAACAATTACTTGAATTTGAACAACAAT
TAAAACAAAGAGAACATGATTTAAAATTTTCAGAATTAACTTCATTACAATCTTCTTTAC
AACAACCAATTCAACCAATTCAAACAATCCAACCACAACAAATAATTCAACAATCACCAC
GTGCACTTAAACTGTGAAAATCAATTGCTCCAAGAATGTCAGTTTTATCGTCATCGTCAT
CAATATCATCATCATCATCATCAACTGTTTCGAAAATACCAAGAAAATCATTAATACCAC
C----------GCAGTGGAATTAAATCAAACAGTTTCAGAGATTGAAATTAAAACTAAAC
AATTGGAAGATAAAGAAAAGGAATTAGAAATATCACAAAAGAAATATTTAGAAAAGAAAA
AACAATTACTTGAATTTGAACAACAATTAAAACAAAGAGAACATGATTTAAAATTTTCAG
AATTAACTTCATTACAATCTTCTTTACAACAACCAATTCAACCAATTCAAACAATCCAAC
CACAACCAATAATTCAACAATCACCACGTGCACTTAAACAGAGAAAATCAATTGCTCCAA
GAATGTCAGTTTTATCGTCATCGTCATCAATATCATCATCATCATCATCAACTGTTTCGA
AAATACCAAGAAAATCATTAATACCACCAACTTCAACAAAAGAAAATATACCAAATTCAT
CCTTTTCATCAACACAATCAAGTTTAAAATCAAAAATTCCACAAAGACGTCCAACAATTT
TAGTTTCATCCATCAATAGTAATAGTAGCGGTGGTATTAGTCAAAACTAAAAAAAAAAAA
AAAAAAAACAAACAAATAAATAAATAAATATTTAATGATAATAATAAAAAAAATCAATAA
AATTGTATAAATCCA
Length of connected seq. 1205
Full length Seq ID SSJ719E
Full length Seq. 
>SSJ719E.Seq
AAGAAACAATAGATAGAGGAATAAATTTTGATAATGTAAGTAATTTAGATGAACAATTAT
TTGAAATTGAATGTCAAAGAGAAGAGAATAGACAAGAAAAAGAGAAAATAAAATTTGAAG
AACAAAGAATTCAATTAAAAGAAAAAGAATTAAATGAAAAAGAATTTAGATTGGATGAAA
AGGAATTTGAAATTGAGGATGAAAAAGAAAAACTTAGACAATTGGCAGTGGAATTAAATC
AAACAGTTTCAGAGATTGAAATTAAAACTAAACAATTGGAAGATAAAGAAAAGGAATTAG
AAATATCACAAAAGAAATATTTAGAAAAGAAAAAACAATTACTTGAATTTGAACAACAAT
TAAAACAAAGAGAACATGATTTAAAATTTTCAGAATTAACTTCATTACAATCTTCTTTAC
AACAACCAATTCAACCAATTCAAACAATCCAACCACAACNAATAATTCAACAATCACCAC
GTGCACTTAAACNGNGAAAATCAATTGCTCCAAGAATGTCAGTTTTATCGTCATCGTCAT
CAATATCATCATCATCATCATCAACTGTTTCGAAAATACCAAGAAAATCATTAATACCAC
CAACTTCAACAAAAGAAAATATACCAAATTCATCCTTTTCATCAACACAATCAAGTTTAA
AATCAAAAATTCCACAAAGACGTCCAACAATTTTAGTTTCATCCATCAATAGTAATAGTA
GCGGTGGTATTAGTCAAAACTAAAAAAAAAAAAAAAAAAAACAAACAAATAAATAAATAA
ATATTTAATGATAATAATAAAAAAAATCAATAAAATTGTATAAATCCA
Length of full length seq. 828