>SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/
XXXXXXXXXXACTACTGGTAATGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGT
TTCATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGA
ACAAGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCATATAATTATATCAT
TAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCTGAAACAGGTACACA
ATGTAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAA
GAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGA
TGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTC
ACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAA
TATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACAT
TTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAAT
TTAAATTTATACCAAATATTTAGTTTAG

---TGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIK
NGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADA
VEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIY
LRRGKNTCGVSNFVSTSII*iytkylv*

Frame A:
---llvmlrdnislvrin*fhyqsktw*ivimsvwnmkvnklvmrvvmvvfnqmhiiisl
kmvefkqnlhiltllkqvhnvtltlpilvqrfpilq*sqrmkl*wlgtslvldhsqlllm
llsgnfilvvylifhviqihlimvf*llvtllkiqfsvkichigl*rilgvqigenkdtf
i*eeerihvvyqtlfqlv*fkfipni*f


Frame B:
---yw*c*gttfh*se*isfiiraklgrl*s*vygi*r*tsl**gl*wwsstkci*lyh*
kwwnsnrifislhc*nrytm*l*lcqywckdfqfyndpke*ncngwvhr*ywttrncc*c
c*vailywwci*ysm*skft*swyfncwllc*kynfp*kyaildckeflgcrlgrtrihl
fkkrkeymwciklcfn*ynlnlyqifsl


Frame C:
---TGNVEGQHFISQNKLVSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIK
NGGIQTESSYPYTAETGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADA
VEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIY
LRRGKNTCGVSNFVSTSII*iytkylv*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                       1225   0.0
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                       1225   0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                       1225   0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/                       1225   0.0
SSA534 (SSA534Q) /CSM/SS/SSA5-B/SSA534Q.Seq.d/                       1213   0.0
AFE263 (AFE263Q) /CSM/AF/AFE2-C/AFE263Q.Seq.d/                       1209   0.0
AHL332 (AHL332Q) /CSM/AH/AHL3-B/AHL332Q.Seq.d/                       1205   0.0
SFA691 (SFA691Q) /CSM/SF/SFA6-D/SFA691Q.Seq.d/                       1203   0.0
SSE172 (SSE172Q) /CSM/SS/SSE1-C/SSE172Q.Seq.d/                       1201   0.0
CFF469 (CFF469Q) /CSM/CF/CFF4-C/CFF469Q.Seq.d/                       1185   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.     1217   0.0    1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                   216   8e-54  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   216   8e-54  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   216   8e-54  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                    216   8e-54  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   216   8e-54  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   216   8e-54  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   216   8e-54  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   216   9e-54  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                      216   9e-54  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   417   e-115
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   223   3e-57
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   213   5e-54
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...   211   1e-53
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   203   3e-51
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   202   5e-51
AC149637_11(AC149637|pid:none) Medicago truncatula clone mth2-18...   202   6e-51
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20...   202   8e-51
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot...   201   1e-50
AB270920_1(AB270920|pid:none) Phaseolus vulgaris CP2 gene for cy...   201   1e-50

 psg: 0.75  gvh: 0.34  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 44.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: mitochondrial

>> prediction for SSJ694 is cyt

>SSJ694Z.Seq
----------ACTACTGGTAATGTTGAGGGACAACATTTCATTAGTCAGAATAAATTAGT
TTCATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATGGAATATGAAGGTGA
ACAAGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCATATAATTATATCAT
TAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCTGAAACAGGTACACA
ATGTAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTTACAATGATCCCAAA
GAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGA
TGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTC
ACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAA
TATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACAT
TTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAAT
TTAAATTTATACCAAATATTTAGTTTAG