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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ683
Library SS
(Link to library)
Clone ID SSJ683
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10309-1
Original site URL
Representative seq. ID SSJ683P
(Link to Original site)
Representative DNA sequence 
>SSJ683 (SSJ683Q) /CSM/SS/SSJ6-D/SSJ683Q.Seq.d/
AGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTGCTTATTTAGTTGTAGGTGGTGC
TGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTGTCACAGCATTAAGTACAATGTC
ACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAGTTGATCTTAGTGGTATCCCAGA
ATCAACCGCTGTTGTTGTAAAGTGGAGAGGTAAACCATTATTCATTCGTCACAGATCCGC
TGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAACACTCCCAGATCCACAAGCTGA
TAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAGTTGGTGTTTGCACTCATTTAGG
TTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTTGGTATTGTCCATGTCATGGTTC
TCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTGCCCCAATGAACTTAATCGTTCC
ACCATATAAATTCATTACTTCCGATAAAATCATTGTTGGTGATGAATAAATTTAAATATT
CCATTTAAATAATAATATAATAATAATAXXXXXXXXXXTAATAATAATAATAATAATAAT
AATAATCAAAAAAAATAATACTCACAATATTTAAAAAACAATAACTTTTTTTTTTCCAAA
AACAAAATTCAATATATACATAAAATAGTGCTGTACATAAATCTTTAAATAATTTTTGGT
ACAGCTGTTAAATTACAAAAAAACAATACAAAAAAAAAAAAAAAAAAAAAAAAACTCTTT
AATTTACTTTTTCTTAAATAATGCGAGAGAATAAAAAAATAAAAATAAAATTTAATT
sequence update 1998.11.17
Translated Amino Acid sequence 
eknevdpenrgfaylvvggagaglaaiakntvvtalstmspgqdilalssvevdlsgipe
stavvvkwrgkplfirhrsaeeisesqavqlstlpdpqadnarskvpewiilvgvcthlg
cipisgggdyngwycpchgshydnagrirkgpapmnlivppykfitsdkiivgde*i*IF
HLNNNIIII---

---IIIIIIIIIKKNNTHNI*ktitfffpktkfniyik*cct*ifk*flvqllnykktiq
kkkkkkknsliyfflnnare*knknki*
Translated Amino Acid sequence (All Frames) 
Frame A:
rke*s*srepwiclfscrwcwcwfssycqehcchsikynvtrsryscliis*s*s*wypr
inrccckver*tiihssqir*rnl*itscpiintprsts**rsfkstrmdyfswclhsfr
lypnfrww*lqwlvlsmswfsl**rwsy*kgscpnelnrsti*ihyfr*nhcw**inlni
pfk**ynnn---

---*********skkiiltifkkq*lfffqkqnsiyt*nsavhkslnnfwysc*itkkqy
kkkkkkkktl*ftfs*imrenkkikikfn

Frame B:
eknevdpenrgfaylvvggagaglaaiakntvvtalstmspgqdilalssvevdlsgipe
stavvvkwrgkplfirhrsaeeisesqavqlstlpdpqadnarskvpewiilvgvcthlg
cipisgggdyngwycpchgshydnagrirkgpapmnlivppykfitsdkiivgde*i*IF
HLNNNIIII---

---nnnnnnnnnqkk*ysqylknnnfffsknkiqyihkivlyinl*iifgtavklqknnt
kkkkkkkklfnllflk*cerikk*k*nli

Frame C:
krmkliqrtvdlli*l*vvlvlv*qllprtllsqh*vqchqvkiflpyhqlklilvvsqn
qplll*sgevnhysfvtdplkkslnhklsnyqhsqihklitlvqkyqnglf*lvfali*v
vsqfqvvvitmvgivhvmvltmitlvvlervlpq*t*sfhhinsllpiksllvmnkfkys
i*iii***---

---IIIIIIIIIKKNNTHNI*ktitfffpktkfniyik*cct*ifk*flvqllnykktiq
kkkkkkknsliyfflnnare*knknki*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ683 (SSJ683Q) /CSM/SS/SSJ6-D/SSJ683Q.Seq.d/                       1039   0.0
VFK857 (VFK857Q) /CSM/VF/VFK8-C/VFK857Q.Seq.d/                       1009   0.0
VSI365 (VSI365Q) /CSM/VS/VSI3-C/VSI365Q.Seq.d/                        983   0.0
SSJ558 (SSJ558Q) /CSM/SS/SSJ5-C/SSJ558Q.Seq.d/                        963   0.0
VSJ422 (VSJ422Q) /CSM/VS/VSJ4-A/VSJ422Q.Seq.d/                        630   e-180
VSG619 (VSG619Q) /CSM/VS/VSG6-A/VSG619Q.Seq.d/                        468   e-131
SSE810 (SSE810Q) /CSM/SS/SSE8-A/SSE810Q.Seq.d/                        291   9e-78
VFG870 (VFG870Q) /CSM/VF/VFG8-C/VFG870Q.Seq.d/                        143   5e-33
VHN526 (VHN526Q) /CSM/VH/VHN5-B/VHN526Q.Seq.d/                         38   0.21
CHR704 (CHR704Q) /CSM/CH/CHR7-A/CHR704Q.Seq.d/                         38   0.21
own update 2003.10.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AJ537862|AJ537862.1 Timarcha balearica EST, clone Timarcha4E2.     44   4e-10  3
AJ235271|AJ235271.1 Rickettsia prowazekii strain Madrid E, complete genome; segment 2/4.    48   4e-05  2
CG431637|CG431637.1 Bg7-T3 Glomus intraradices Bgl II library (in pBK-CMV stratagene) Glomus intraradices genomic clone Bg7-T3, genomic survey sequence.    44   2e-04  2
BU769398|BU769398.1 SJECEF02 SJE Schistosoma japonicum cDNA, mRNA sequence.    42   5e-04  2
BU769171|BU769171.1 SJECCA10 SJE Schistosoma japonicum cDNA, mRNA sequence.    42   5e-04  2
BU715697|BU715697.1 SJMCHF03 SJM Schistosoma japonicum cDNA, mRNA sequence.    42   7e-04  2
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    38   0.001  9
AV949482|AV949482.1 Ciona intestinalis cDNA, clone:ciad02g14, 5' end, single read.    40   0.002  2
AV863468|AV863468.1 Ciona intestinalis cDNA, clone:rcieg48m23, 3' end, single read.    40   0.002  2
BW065930|BW065930.1 Ciona intestinalis cDNA, clone:rciad096o09, 3' end, single read.    40   0.003  2
dna update 2004. 2.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY387524_1(AY387524|pid:none) Nycticebus coucang ubiquinol-cytoc...   203   5e-51
(Q69BK2) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   202   1e-50
AY387520_1(AY387520|pid:none) Pithecia irrorata ubiquinol-cytoch...   201   2e-50
AY387494_1(AY387494|pid:none) Eulemur fulvus Rieske iron sulfur ...   201   2e-50
AY387522_1(AY387522|pid:none) Tarsius syrichta ubiquinol-cytochr...   201   2e-50
(P13272) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   201   2e-50
DQ213880_1(DQ213880|pid:none) Taeniopygia guttata clone 0058P004...   201   3e-50
A32296(A32296) ubiquinol-cytochrome-c reductase (EC 1.10.2.2) Ri...   200   4e-50
(P20788) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   200   4e-50
(Q9CR68) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   200   5e-50
protein update 2009. 6.14
PSORT 

 psg: 1.01  gvh: 0.20  alm: 0.13  top: 0.60  tms: 0.07  mit: 0.36  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: Golgi
	  8.0 %: mitochondrial
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for SSJ683 is nuc
5' end seq. ID SSJ683F
5' end seq. 
>SSJ683F.Seq
AGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTGCTTATTTAGTTGTAGGTGGTGC
TGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTGTCACAGCATTAAGTACAATGTC
ACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAGTTGATCTTAGTGGTATCCCAGA
ATCAACCGCTGTTGTTGTAAAGTGGAGAGGTAAACCATTATTCATTCGTCACAGATCCGC
TGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAACACTCCCAGATCCACAAGCTGA
TAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAGTTGGTGTTTGCACTCATTTAGG
TTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTTGGTATTGTCCATGTCATGGTTC
TCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTGCCCCAATGAACTTAATCGTTCC
ACCATATAAATTCATTACTTCCGATAAAATCATTGTTGGTGATGAATAAATTTAAATATT
CCATTTAAATAATAATATAATAATAATA----------
Length of 5' end seq. 568
3' end seq. ID SSJ683Z
3' end seq. 
>SSJ683Z.Seq
----------TAATAATAATAATAATAATAATAATAATCAAAAAAAATAATACTCACAAT
ATTTAAAAAACAATAACTTTTTTTTTTCCAAAAACAAAATTCAATATATACATAAAATAG
TGCTGTACATAAATCTTTAAATAATTTTTGGTACAGCTGTTAAATTACAAAAAAACAATA
CAAAAAAAAAAAAAAAAAAAAAAAAACTCTTTAATTTACTTTTTCTTAAATAATGCGAGA
GAATAAAAAAATAAAAATAAAATTTAATT
Length of 3' end seq. 259
Connected seq. ID SSJ683P
Connected seq. 
>SSJ683P.Seq
AGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTGCTTATTTAGTTGTAGGTGGTGC
TGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTGTCACAGCATTAAGTACAATGTC
ACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAGTTGATCTTAGTGGTATCCCAGA
ATCAACCGCTGTTGTTGTAAAGTGGAGAGGTAAACCATTATTCATTCGTCACAGATCCGC
TGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAACACTCCCAGATCCACAAGCTGA
TAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAGTTGGTGTTTGCACTCATTTAGG
TTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTTGGTATTGTCCATGTCATGGTTC
TCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTGCCCCAATGAACTTAATCGTTCC
ACCATATAAATTCATTACTTCCGATAAAATCATTGTTGGTGATGAATAAATTTAAATATT
CCATTTAAATAATAATATAATAATAATA----------TAATAATAATAATAATAATAAT
AATAATCAAAAAAAATAATACTCACAATATTTAAAAAACAATAACTTTTTTTTTTCCAAA
AACAAAATTCAATATATACATAAAATAGTGCTGTACATAAATCTTTAAATAATTTTTGGT
ACAGCTGTTAAATTACAAAAAAACAATACAAAAAAAAAAAAAAAAAAAAAAAAACTCTTT
AATTTACTTTTTCTTAAATAATGCGAGAGAATAAAAAAATAAAAATAAAATTTAATT
Length of connected seq. 827
Full length Seq ID -
Full length Seq. -
Length of full length seq. -