SSJ679
Library SS
(Link to library)
Clone ID SSJ679
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12258-1
Original site URL
Representative seq. ID SSJ679P
(Link to Original site)
Representative DNA sequence
>SSJ679 (SSJ679Q) /CSM/SS/SSJ6-D/SSJ679Q.Seq.d/
CTTTTTATTCAAGTCGTATAAAATTAAACAGTGTTAATAACAAAAATCAAATATGAAATC
AATAAGAAATTAATTATATAATAAGAATAATAAAGCCAGGAGCACATTTATTTATTAATT
TATTTATTAATTTATTTATTTATTTATTTTTTTATTTATXXXXXXXXXXAAAAAAAAAAA
AATAAAAAAAAAAAAAAAAATTGGCTCAAATCTAACAATTTAAATTGTTATTTAATTCTT
AAACAACAAATAATTGTTTAAAATTAGTTTTTTTATTATTTTGATTAAATAAATTGTTNT
TAANCTANNTTTTTAAAAAAAAAATTTTAGTGAATTTTTACACTATGTATAAACAGTGTA
TTTTAGTGTAAAAATTCACTGCCGTTTAGAAAGCGAAATTTCAAAAAAAATTCCCTACAA
CATTGTTGTGCCAAAAAAGCCAAATTATTTTTCTCTAAATTTTTTTTATTATTTTTTTTA
TTATTTTTTTTTTTTTTTTAAGTTGTTTCATCAATTTTATTTATTCTAATTTGTAGTTAA
TAATTAGTTTACTGATTTTATTCAAACAAATAATGAAAATTTACTTACTAACTTTGGAAA
AAAAAAAAGGTGAAAA
sequence update 1998.11.17
Translated Amino Acid sequence
fyssriklnsvnnknqi*nq*EINYIIRIIKPGAHLFINLFINLFIYLFFYL---

---KKKNKKKKKNWLKSNNLNCYLILKQQIIV*n*ffyyfd*incx*xxflkkkf**ift
lcinsvf*cknslpfrkrnfkknslqhccakkaklffskffllffllfffff*vvssilf
ilics**lvy*fysnk**kfty*lwkkkkvk


Translated Amino Acid sequence (All Frames)
Frame A:
lfiqvv*n*tvlitkikyeinkklii**e**sqehiylliylliylfiyffiy---

---kkkkikkkkkigsnlti*ivi*flnnk*lfkisffiilik*ivxxlxf*kknfsefl
hyv*tvyfsvkihcrleseiskkipynivvpkkpnyfslnffyyffyyfffffklfhqfy
lf*fvvnn*ftdfiqtnnenlltnfgkkkr*k

Frame B:
flfksykikqc**qksnmksirn*lynknnkarstfiy*fiy*fiylfiflf---

---kkkk*kkkkklaqi*qfkllfns*ttnnclklvfllf*lnklxlxxxfkkkilvnfy
tmykqcilv*kftav*kakfqkkfpttllcqksqiifl*iffiiffiifffflscfinfi
ysnl*liisllilfkqimkiylltlekkkge

Frame C:
fyssriklnsvnnknqi*nq*EINYIIRIIKPGAHLFINLFINLFIYLFFYL---

---KKKNKKKKKNWLKSNNLNCYLILKQQIIV*n*ffyyfd*incx*xxflkkkf**ift
lcinsvf*cknslpfrkrnfkknslqhccakkaklffskffllffllfffff*vvssilf
ilics**lvy*fysnk**kfty*lwkkkkvk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ679 (SSJ679Q) /CSM/SS/SSJ6-D/SSJ679Q.Seq.d/ 341 8e-93
CHQ467 (CHQ467Q) /CSM/CH/CHQ4-C/CHQ467Q.Seq.d/ 68 2e-10
VHG752 (VHG752Q) /CSM/VH/VHG7-C/VHG752Q.Seq.d/ 42 0.010
VSD196 (VSD196Q) /CSM/VS/VSD1-D/VSD196Q.Seq.d/ 40 0.039
VHN724 (VHN724Q) /CSM/VH/VHN7-A/VHN724Q.Seq.d/ 38 0.15
CHC783 (CHC783Q) /CSM/CH/CHC7-D/CHC783Q.Seq.d/ 38 0.15
VSJ187 (VSJ187Q) /CSM/VS/VSJ1-D/VSJ187Q.Seq.d/ 36 0.61
VHO240 (VHO240Q) /CSM/VH/VHO2-B/VHO240Q.Seq.d/ 36 0.61
VHO124 (VHO124Q) /CSM/VH/VHO1-A/VHO124Q.Seq.d/ 36 0.61
VHH552 (VHH552Q) /CSM/VH/VHH5-C/VHH552Q.Seq.d/ 36 0.61

own update 2003. 6.16
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF298206|AF298206.2 Dictyostelium discoideum transposon Tdd-5, complete sequence. 155 3e-86 4
X15381|X15381.1 Dictyostelium discoideum V4a gene. 147 4e-71 5
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence. 133 7e-37 7
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 137 2e-34 10
AC115681|AC115681.2 Dictyostelium discoideum chromosome 2 map 6097680-6105897 strain AX4, complete sequence. 137 1e-32 2
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 129 4e-32 2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 139 2e-30 12
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence. 46 2e-07 2
AP004173|AP004173.1 Mycoplasma penetrans genomic DNA, complete sequence, section 4/5. 32 8e-04 11
BX072577|BX072577.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-151G22. 32 0.021 11
dna update 2004. 2.16
Homology vs Protein

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 403,489,872
protein update 2009. 6.14
PSORT

psg: 0.95 gvh: 0.34 alm: 0.26 top: 0.97 tms: 0.07 mit: 0.32 mip: 0.00
nuc: 0.08 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.33 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 1.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSJ679 is nuc

5' end seq. ID SSJ679F
5' end seq.
>SSJ679F.Seq
CTTTTTATTCAAGTCGTATAAAATTAAACAGTGTTAATAACAAAAATCAAATATGAAATC
AATAAGAAATTAATTATATAATAAGAATAATAAAGCCAGGAGCACATTTATTTATTAATT
TATTTATTAATTTATTTATTTATTTATTTTTTTATTTAT----------
Length of 5' end seq. 159
3' end seq. ID SSJ679Z
3' end seq.
>SSJ679Z.Seq
----------AAAAAAAAAAAAATAAAAAAAAAAAAAAAAATTGGCTCAAATCTAACAAT
TTAAATTGTTATTTAATTCTTAAACAACAAATAATTGTTTAAAATTAGTTTTTTTATTAT
TTTGATTAAATAAATTGTTNTTAANCTANNTTTTTAAAAAAAAAATTTTAGTGAATTTTT
ACACTATGTATAAACAGTGTATTTTAGTGTAAAAATTCACTGCCGTTTAGAAAGCGAAAT
TTCAAAAAAAATTCCCTACAACATTGTTGTGCCAAAAAAGCCAAATTATTTTTCTCTAAA
TTTTTTTTATTATTTTTTTTATTATTTTTTTTTTTTTTTTAAGTTGTTTCATCAATTTTA
TTTATTCTAATTTGTAGTTAATAATTAGTTTACTGATTTTATTCAAACAAATAATGAAAA
TTTACTTACTAACTTTGGAAAAAAAAAAAGGTGAAAA
Length of 3' end seq. 447
Connected seq. ID SSJ679P
Connected seq.
>SSJ679P.Seq
CTTTTTATTCAAGTCGTATAAAATTAAACAGTGTTAATAACAAAAATCAAATATGAAATC
AATAAGAAATTAATTATATAATAAGAATAATAAAGCCAGGAGCACATTTATTTATTAATT
TATTTATTAATTTATTTATTTATTTATTTTTTTATTTAT----------AAAAAAAAAAA
AATAAAAAAAAAAAAAAAAATTGGCTCAAATCTAACAATTTAAATTGTTATTTAATTCTT
AAACAACAAATAATTGTTTAAAATTAGTTTTTTTATTATTTTGATTAAATAAATTGTTNT
TAANCTANNTTTTTAAAAAAAAAATTTTAGTGAATTTTTACACTATGTATAAACAGTGTA
TTTTAGTGTAAAAATTCACTGCCGTTTAGAAAGCGAAATTTCAAAAAAAATTCCCTACAA
CATTGTTGTGCCAAAAAAGCCAAATTATTTTTCTCTAAATTTTTTTTATTATTTTTTTTA
TTATTTTTTTTTTTTTTTTAAGTTGTTTCATCAATTTTATTTATTCTAATTTGTAGTTAA
TAATTAGTTTACTGATTTTATTCAAACAAATAATGAAAATTTACTTACTAACTTTGGAAA
AAAAAAAAGGTGAAAA
Length of connected seq. 606
Full length Seq ID -
Full length Seq. -
Length of full length seq. -