>SSJ639 (SSJ639Q) /CSM/SS/SSJ6-B/SSJ639Q.Seq.d/
XXXXXXXXXXTTGTTGCAGTAGGAAGAAATTATGCACAACATGCTAAAGAATTAGGAAAT
GAAATTCCATCAGAACCATTCTTTTTTTTAAAACCAACTTCAAGTTATTTACTTCAAGGA
ACTGGTCCAATTGAAATCCCATTAGAATCATCAGATATTCACCATGAAGTTGAATTAGGT
ATTGTCATTGGTAAAAAAGGTAGAGATATTGATTTAAAATCTGCAATGGATTATGTTAGT
GGTTATACATTAGCTTTAGATATGACTTCAAGAGATCAACAATCAATTGCCAAAGCTAAA
TCATTACCATGGACAGTTTCAAAAGGTTATGATACATTTTGTCCAATTTCTGGATTTATA
CCAAAAGATAAAATTAAAGATTTAAATAATGTTGAATTATGGTGTAGTGTCGATGGTCAA
ATCAAACAAAAAGGTAATACCAACCAAATGATTTTCGATGTTCCACATTTAATTCAATAT
ATTAGTTCAATTATGACATTAGAATCTGGCGATTTAATTTTAACTGGTACACCTTCTGGT
GTTGGTCCAGTAAAACCTGGACAAGTAATTAAATGTGGTATCACTGGTTTAGATACTGAC
ATGCAATTCGATATCATTTTAAGAAAGAGAAATTAAAATCCTTTTAAAATTATAAATTAT
AAATAAAAAAAAAAAAAATTAAAA

---VAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDIHHEVELGI
VIGKKGRDIDLKSAMDYVSGYTLALDMTSRDQQSIAKAKSLPWTVSKGYDTFCPISGFIP
KDKIKDLNNVELWCSVDGQIKQKGNTNQMIFDVPHLIQYISSIMTLESGDLILTGTPSGV
GPVKPGQVIKCGITGLDTDMQFDIILRKRN*npfkiinyk*kkkklk

Frame A:
---ccsrkklcttc*rirk*nsirtilffktnfklftsrnwsn*npiriirysp*s*iry
chw*kr*ry*fkicnglc*wlyisfrydfkrstincqs*iitmdsfkrl*yilsnfwiyt
kr*n*rfk*c*imv*crwsnqtkr*yqpndfrcstfnsiy*fnydiriwrfnfnwytfwc
wssktwtsn*mwyhwfry*hairyhfkkeklksf*nykl*ikkkkik


Frame B:
---VAVGRNYAQHAKELGNEIPSEPFFFLKPTSSYLLQGTGPIEIPLESSDIHHEVELGI
VIGKKGRDIDLKSAMDYVSGYTLALDMTSRDQQSIAKAKSLPWTVSKGYDTFCPISGFIP
KDKIKDLNNVELWCSVDGQIKQKGNTNQMIFDVPHLIQYISSIMTLESGDLILTGTPSGV
GPVKPGQVIKCGITGLDTDMQFDIILRKRN*npfkiinyk*kkkklk


Frame C:
---lq*eeimhnmlkn*emkfhqnhsff*nqlqviyfkelvqlksh*nhqiftmkln*vl
slvkkveili*nlqwimlvvih*l*i*lqeinnqlpklnhyhgqfqkvmihfvqfldlyq
kiklki*imlnygvvsmvksnkkviptk*fsmfhi*fnilvql*h*nlai*f*lvhllvl
vq*nldk*lnvvslv*iltcnsisf*ereikillkl*iinkkkkn*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ639 (SSJ639Q) /CSM/SS/SSJ6-B/SSJ639Q.Seq.d/                       1249   0.0
SSK213 (SSK213Q) /CSM/SS/SSK2-A/SSK213Q.Seq.d/                       1187   0.0
VSA638 (VSA638Q) /CSM/VS/VSA6-B/VSA638Q.Seq.d/                       1183   0.0
VSH873 (VSH873Q) /CSM/VS/VSH8-D/VSH873Q.Seq.d/                        767   0.0
SSH229 (SSH229Q) /CSM/SS/SSH2-B/SSH229Q.Seq.d/                         50   4e-05
SSB887 (SSB887Q) /CSM/SS/SSB8-D/SSB887Q.Seq.d/                         40   0.043
VSF742 (VSF742Q) /CSM/VS/VSF7-B/VSF742Q.Seq.d/                         38   0.17
VFF795 (VFF795Q) /CSM/VF/VFF7-D/VFF795Q.Seq.d/                         38   0.17
VFC546 (VFC546Q) /CSM/VF/VFC5-B/VFC546Q.Seq.d/                         38   0.17
SSL526 (SSL526Q) /CSM/SS/SSL5-B/SSL526Q.Seq.d/                         38   0.17

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   722  0.0  3
BU795333|BU795333.1 SJF2DND02 SJF Schistosoma japonicum cDNA, mRNA sequence.    52  5e-11  3
BU716480|BU716480.1 SJM2ATH08 SJM Schistosoma japonicum cDNA, mRNA sequence.    48  8e-04  2
BU779297|BU779297.1 SJEEWE02 SJE Schistosoma japonicum cDNA, mRNA sequence.    54  0.002  1
AX621976|AX621976.1 Sequence 4939 from Patent WO02094868.         46  0.013  2
BD186427|BD186427.1 Improved method of detecting and identifying microorganism causative of infection.    46  0.033  3
BD186408|BD186408.1 Method for evaluating function by phagocyte and use thereof.    46  0.033  3
AX347546|AX347546.1 Sequence 2 from Patent EP1160334.             46  0.033  3
AX347523|AX347523.1 Sequence 2 from Patent EP1167544.             46  0.033  3
AX347500|AX347500.1 Sequence 2 from Patent EP1167542.             46  0.033  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q86I22) RecName: Full=Fumarylacetoacetate hydrolase domain-cont...   420   e-116
BT070536_1(BT070536|pid:none) Picea sitchensis clone WS02735_B01...   255   1e-66
AY057593_1(AY057593|pid:none) Arabidopsis thaliana AT4g15940/dl4...   254   2e-66
GN097326_1(GN097326|pid:none) Sequence 2107 from Patent WO200903...   253   4e-66
GN097328_1(GN097328|pid:none) Sequence 2109 from Patent WO200903...   253   4e-66
GN097330_1(GN097330|pid:none) Sequence 2111 from Patent WO200903...   253   4e-66
AE017350_117(AE017350|pid:none) Cryptococcus neoformans var. neo...   246   5e-64
AC096687_4(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJN...   245   1e-63
BT039735_1(BT039735|pid:none) Zea mays full-length cDNA clone ZM...   244   1e-63
EU968886_1(EU968886|pid:none) Zea mays clone 324716 fumarylaceto...   244   2e-63

 psg: 0.48  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSJ639 is cyt

>SSJ639Z.Seq
----------TTGTTGCAGTAGGAAGAAATTATGCACAACATGCTAAAGAATTAGGAAAT
GAAATTCCATCAGAACCATTCTTTTTTTTAAAACCAACTTCAAGTTATTTACTTCAAGGA
ACTGGTCCAATTGAAATCCCATTAGAATCATCAGATATTCACCATGAAGTTGAATTAGGT
ATTGTCATTGGTAAAAAAGGTAGAGATATTGATTTAAAATCTGCAATGGATTATGTTAGT
GGTTATACATTAGCTTTAGATATGACTTCAAGAGATCAACAATCAATTGCCAAAGCTAAA
TCATTACCATGGACAGTTTCAAAAGGTTATGATACATTTTGTCCAATTTCTGGATTTATA
CCAAAAGATAAAATTAAAGATTTAAATAATGTTGAATTATGGTGTAGTGTCGATGGTCAA
ATCAAACAAAAAGGTAATACCAACCAAATGATTTTCGATGTTCCACATTTAATTCAATAT
ATTAGTTCAATTATGACATTAGAATCTGGCGATTTAATTTTAACTGGTACACCTTCTGGT
GTTGGTCCAGTAAAACCTGGACAAGTAATTAAATGTGGTATCACTGGTTTAGATACTGAC
ATGCAATTCGATATCATTTTAAGAAAGAGAAATTAAAATCCTTTTAAAATTATAAATTAT
AAATAAAAAAAAAAAAAATTAAAA