>SSJ623 (SSJ623Q) /CSM/SS/SSJ6-A/SSJ623Q.Seq.d/
AAACCCCACAAAGAAAAAAAAAGAATAAAAATAAAATAAAGTACACAATCCACACACACA
CACCTCAAGTAAATACATCATATAAATTTAGAATATTATATAATGAATTCAATGATTAGA
AATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAATACAAGTGGTTTAGTTTTTAGA
CAAACAAATGTTAATTTTTTAAAATCCTCAACAACCACAACAGCAATTAAAAGTGGAATT
TTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAGAGTATTGGATCATTATAATAAC
CCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGATGTTGGTACTGCAACCGTTGGT
GCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAAGGTAAAGGAAAACATTGTTGTC
GATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAATCGCTTCAAGTTCATTGGCAACT
GAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGAAATTAAAAATACCGATATCGCA
AAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAGTATGCTTGCCGAACAAGCTATC
AAAAGAGCTATCTATGATTACXXXXXXXXXX

kphkekkrikik*stqsththlk*IHHINLEYYIMNSMIRNVLKTTTNVGLKNTSGLVFR
QTNVNFLKSSTTTTAIKSGIFGELITKRNYHERVLDHYNNPRNIGSFDKKDIDVGTATVG
APACGDVMKIQIKVKENIVVDVCFKTFGCGSAIASSSLATEWVKGKTLDQCLEIKNTDIA
KHLSLPPVKMHCSMLAEQAIKRAIYD---

Frame A:
kphkekkrikik*stqsththlk*IHHINLEYYIMNSMIRNVLKTTTNVGLKNTSGLVFR
QTNVNFLKSSTTTTAIKSGIFGELITKRNYHERVLDHYNNPRNIGSFDKKDIDVGTATVG
APACGDVMKIQIKVKENIVVDVCFKTFGCGSAIASSSLATEWVKGKTLDQCLEIKNTDIA
KHLSLPPVKMHCSMLAEQAIKRAIYD---


Frame B:
nptkkkke*k*nkvhnphthtsskyii*i*nii**iq*lemylklqqmlv*kiqvv*fld
kqmlif*npqqpqqqlkveflen*lqkeiimkeywiiiitqeilghsirkismlvlqplv
hqhvvtl*kfksr*rktllsmfvskllvvvlqslqvhwqlng*kvkh*invsklkipisq
nishfhq*kcivvclpnklskelsmi---


Frame C:
tpqrkkknknkikytihthtpqvntsykfrilynefnd*kct*nynkcwfkkykwfsf*t
nkc*ffkilnnhnsn*kwnfwrtnykkkls*ksigsl**pkkywvir*eryrcwycnrwc
tsmw*ryensnqgkgkhccrclfqnfwlwfcnrfkfign*mgkr*nirsmsrn*kyryrk
tsltstsknal*yacrtsyqksyl*l---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSD315 (VSD315Q) /CSM/VS/VSD3-A/VSD315Q.Seq.d/                       1106   0.0
SSK562 (SSK562Q) /CSM/SS/SSK5-C/SSK562Q.Seq.d/                       1106   0.0
SSJ623 (SSJ623Q) /CSM/SS/SSJ6-A/SSJ623Q.Seq.d/                       1106   0.0
SSI841 (SSI841Q) /CSM/SS/SSI8-B/SSI841Q.Seq.d/                       1003   0.0
SSH360 (SSH360Q) /CSM/SS/SSH3-C/SSH360Q.Seq.d/                        402   e-111
CFJ759 (CFJ759Q) /CSM/CF/CFJ7-C/CFJ759Q.Seq.d/                         38   0.16
VFH447 (VFH447Q) /CSM/VF/VFH4-B/VFH447Q.Seq.d/                         36   0.62
SLJ883 (SLJ883Q) /CSM/SL/SLJ8-D/SLJ883Q.Seq.d/                         36   0.62
SLB503 (SLB503Q) /CSM/SL/SLB5-A/SLB503Q.Seq.d/                         36   0.62
SLA428 (SLA428Q) /CSM/SL/SLA4-B/SLA428Q.Seq.d/                         36   0.62

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BE921448|BE921448.1 EST425133 potato leaves and petioles Solanum tuberosum cDNA clone cSTB13J19 5' sequence, mRNA sequence.    44  2e-16  5
BF188623|BF188623.1 EST444910 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA45E24 5' sequence, mRNA sequence.    44  2e-16  5
BF188028|BF188028.1 EST444315 potato stolon, Cornell University Solanum tuberosum cDNA clone cSTA43O5 5' sequence, mRNA sequence.    44  4e-16  5
BG098716|BG098716.1 EST463235 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC5B3 5' sequence, mRNA sequence.    44  4e-16  5
BI176136|BI176136.1 EST517219 cSTS Solanum tuberosum cDNA clone cSTS27D22 5' sequence, mRNA sequence.    44  4e-16  5
BG594001|BG594001.1 EST492679 cSTS Solanum tuberosum cDNA clone cSTS6M7 5' sequence, mRNA sequence.    44  4e-16  5
BQ047062|BQ047062.1 EST596180 P. infestans-challenged potato leaf, incompatible reaction Solanum tuberosum cDNA clone BPLI16J5 5' end, mRNA sequence.    44  7e-16  5
BQ111941|BQ111941.2 EST597517 mixed potato tissues Solanum tuberosum cDNA clone STMCE12 5' end, mRNA sequence.    44  8e-16  5
BG098390|BG098390.1 EST462909 sprouting eyes/shoots Solanum tuberosum cDNA clone cSTC2D6 5' sequence, mRNA sequence.    44  1e-15  5
BG589584|BG589584.1 EST497426 P. infestans-challenged leaf Solanum tuberosum cDNA clone BPLI2C14 5' sequence, mRNA sequence.    44  1e-15  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN111776_1(GN111776|pid:none) Sequence 16557 from Patent WO20090...   197   2e-49
EU952383_1(EU952383|pid:none) Zea mays clone 1279145 nifU-like N...   197   2e-49
GN111528_1(GN111528|pid:none) Sequence 16309 from Patent WO20090...   196   3e-49
BT040469_1(BT040469|pid:none) Zea mays full-length cDNA clone ZM...   196   3e-49
GN111710_1(GN111710|pid:none) Sequence 16491 from Patent WO20090...   195   8e-49
EF676161_1(EF676161|pid:none) Picea sitchensis clone WS02715_O21...   194   2e-48
GN111536_1(GN111536|pid:none) Sequence 16317 from Patent WO20090...   193   3e-48
GN111772_1(GN111772|pid:none) Sequence 16553 from Patent WO20090...   191   1e-47
EF084125_1(EF084125|pid:none) Picea sitchensis clone WS0274_I18 ...   190   2e-47
AC120986_18(AC120986|pid:none) Oryza sativa (japonica cultivar-g...   190   2e-47

 psg: 0.75  gvh: 0.42  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.36  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal

>> prediction for SSJ623 is nuc

>SSJ623F.Seq
AAACCCCACAAAGAAAAAAAAAGAATAAAAATAAAATAAAGTACACAATCCACACACACA
CACCTCAAGTAAATACATCATATAAATTTAGAATATTATATAATGAATTCAATGATTAGA
AATGTACTTAAAACTACAACAAATGTTGGTTTAAAAAATACAAGTGGTTTAGTTTTTAGA
CAAACAAATGTTAATTTTTTAAAATCCTCAACAACCACAACAGCAATTAAAAGTGGAATT
TTTGGAGAACTAATTACAAAAAGAAATTATCATGAAAGAGTATTGGATCATTATAATAAC
CCAAGAAATATTGGGTCATTCGATAAGAAAGATATCGATGTTGGTACTGCAACCGTTGGT
GCACCAGCATGTGGTGACGTTATGAAAATTCAAATCAAGGTAAAGGAAAACATTGTTGTC
GATGTTTGTTTCAAAACTTTTGGTTGTGGTTCTGCAATCGCTTCAAGTTCATTGGCAACT
GAATGGGTAAAAGGTAAAACATTAGATCAATGTCTCGAAATTAAAAATACCGATATCGCA
AAACATCTCTCACTTCCACCAGTAAAAATGCATTGTAGTATGCTTGCCGAACAAGCTATC
AAAAGAGCTATCTATGATTAC----------