>SSJ589 (SSJ589Q) /CSM/SS/SSJ5-D/SSJ589Q.Seq.d/
CAAAAGTTCCATGTCCAAAGATTTTAAAATATTGCCAAGAAGGTGAACTTCCAACTGGTT
GTTGTCCATGTACACCTCAACCAACTAAAAAACCAGATTGTTCAAGAGTTCCATGTCCAA
AGATTTTGAAATACTGTAAAGAAGGTGAACTTCCAACTGGTTGTTGTCCATGTACACCTC
AACCAACTAAAAAACCAGATTGTTCTGATGTAATGTGTACAATGGACATTAGATATTGTA
AAAATGGTGAACTTCCAACTGGTTGTTGTCCTTGCACACCTCAAGAAACCAAAGTTCCAG
ATTGTTCTAAAGCTATGTGCACAATGGATATTAAATATTGTAAACCAGGTGAAAAACCCT
TTGGTTGTTGCCCATGTCGTGAAAATTTAACTCAATAAAAAATTAATAAAATATATATAT
TTGTTTTTTTAATTAATTTAAAATAAAAAA

KVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQ
PTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPF
GCCPCRENLTQ*kinkiyifvflinlk*k

Frame A:
qkfhvqrf*niakkvnfqlvvvhvhlnqlknqivqefhvqrf*ntvkkvnfqlvvvhvhl
nqlknqivlm*cvqwtldivkmvnfqlvvvlahlkkpkfqivlklcaqwilnivnqvknp
lvvahvvki*lnkklikyiylff*li*nkk


Frame B:
kssmskdfkilprr*tsnwllsmytstn*ktrlfkssmskdfeil*rr*tsnwllsmyts
tn*ktrlf*cnvyngh*il*kw*tsnwllslhtsrnqssrlf*syvhngy*il*tr*ktl
wllpms*kfnsikn**niyicffn*fkik


Frame C:
KVPCPKILKYCQEGELPTGCCPCTPQPTKKPDCSRVPCPKILKYCKEGELPTGCCPCTPQ
PTKKPDCSDVMCTMDIRYCKNGELPTGCCPCTPQETKVPDCSKAMCTMDIKYCKPGEKPF
GCCPCRENLTQ*kinkiyifvflinlk*k

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ589 (SSJ589Q) /CSM/SS/SSJ5-D/SSJ589Q.Seq.d/                        779   0.0
SSF516 (SSF516Q) /CSM/SS/SSF5-A/SSF516Q.Seq.d/                        779   0.0
SLE532 (SLE532Q) /CSM/SL/SLE5-B/SLE532Q.Seq.d/                        773   0.0
AHE311 (AHE311Q) /CSM/AH/AHE3-A/AHE311Q.Seq.d/                        763   0.0
CFB787 (CFB787Q) /CSM/CF/CFB7-D/CFB787Q.Seq.d/                        712   0.0
AFI796 (AFI796Q) /CSM/AF/AFI7-D/AFI796Q.Seq.d/                        478   e-134
FC-AB20 (FC-AB20Q) /CSM/FC/FC-AB/FC-AB20Q.Seq.d/                      442   e-123
SFK717 (SFK717Q) /CSM/SF/SFK7-A/SFK717Q.Seq.d/                        359   2e-98
SLK756 (SLK756Q) /CSM/SL/SLK7-C/SLK756Q.Seq.d/                        250   2e-65
VSE690 (VSE690Q) /CSM/VS/VSE6-D/VSE690Q.Seq.d/                         40   0.028

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.   779   0.0    8
M11012|M11012.1 Slime mold (D.discoideum) prestalk D11 gene, complete cds.   167   e-150  7
U30821|U30821.1 Cyanophora paradoxa cyanelle, complete genome.     34   0.017  2
AC016709|AC016709.5 Homo sapiens chromosome 13 clone RP11-231D2, WORKING DRAFT SEQUENCE, 10 unordered pieces.    42   0.019  6
BX546461|BX546461.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-274O20.    38   0.066  9
AF466306|AF466306.1 Dictyostelium discoideum ABC transporter AbcB3 (abcB3) gene, complete cds.    36   0.071  3
AL356111|AL356111.13 Human DNA sequence from clone RP11-501G6 on chromosome 13.    42   0.097  6
AC148057|AC148057.2 Callicebus moloch clone LB5-121J11, WORKING DRAFT SEQUENCE, 3 ordered pieces.    44   0.22   4
AW334824|AW334824.1 S39F8 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    40   0.37   2
AC129092|AC129092.12 Medicago truncatula clone mth2-17n16, WORKING DRAFT SEQUENCE, 5 unordered pieces.    38   0.37   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPDOD1(A23754)prestalk D11 protein precursor - slime mold (Dicty...   150   1e-35
AF196974_1(AF196974|pid:none) Carcinus maenas metallothionein Ib...    39   0.057
S59073(S59073)metallothionein isoform IIa - blue crab                  38   0.13
(P55950) RecName: Full=Metallothionein-2B;          Short=MT-2B;...    38   0.13
AY057395_1(AY057395|pid:none) Portunus pelagicus metallothionein...    36   0.49
AY057397_1(AY057397|pid:none) Scylla serrata metallothionein mRN...    35   0.83
X00821_1(X00821|pid:none) G.gallus type III collagen gene (exon ...    35   1.1
(P12105) RecName: Full=Collagen alpha-1(III) chain; Flags: Precu...    35   1.1
AY057396_1(AY057396|pid:none) Eriocheir sinensis metallothionein...    35   1.1
A05269(A05269;A38035;A20855)collagen alpha 1(III) chain precurso...    35   1.1

 psg: 0.59  gvh: 0.34  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 12.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSJ589 is nuc

>SSJ589E.Seq
CAAAAGTTCCATGTCCAAAGATTTTAAAATATTGCCAAGAAGGTGAACTTCCAACTGGTT
GTTGTCCATGTACACCTCAACCAACTAAAAAACCAGATTGTTCAAGAGTTCCATGTCCAA
AGATTTTGAAATACTGTAAAGAAGGTGAACTTCCAACTGGTTGTTGTCCATGTACACCTC
AACCAACTAAAAAACCAGATTGTTCTGATGTAATGTGTACAATGGACATTAGATATTGTA
AAAATGGTGAACTTCCAACTGGTTGTTGTCCTTGCACACCTCAAGAAACCAAAGTTCCAG
ATTGTTCTAAAGCTATGTGCACAATGGATATTAAATATTGTAAACCAGGTGAAAAACCCT
TTGGTTGTTGCCCATGTCGTGAAAATTTAACTCAATAAAAAATTAATAAAATATATATAT
TTGTTTTTTTAATTAATTTAAAATAAAAAA