NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFL606
Library AF
(Link to library)
Clone ID AFL606
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFL606P
(Link to Original site)
Representative DNA sequence 
>AFL606 (AFL606Q) /CSM/AF/AFL6-A/AFL606Q.Seq.d/
AAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAAC
ATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNNNTTTTTNGAAAAAAAAAA
XXXXXXXXXXTNNNNNNNNNNNNNNGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GGTNNNNNNTTNNNANATGNTNGNNTNTNTNTNATTNNNCATTNNAAAGNNATNNNNTNT
NCATTTAGTCNTNAGATTAANAGGTGGTATGCAAATTTTTGTCANAACCCTCANTGGTAA
GACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCA
AGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGA
GGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTNTCCATTTAGTTCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACT
CGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGG
TATCCC
sequence update 2009. 4. 3
Translated Amino Acid sequence 
nsfllyky*ihilffyil*HFIKKKKKKKXKKXXFXKKK---

---XXXXXVXXXXXXXXXXXVXXXXMXXXXXXXIXKXXXXHLVXRLXGGMQIFVXTLXGK
TITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTXHLVL
RLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGI
Translated Amino Acid sequence (All Frames) 
Frame A:
kihfyytnikfifyffiycnis*kkkkkkxlkxxxfxkkk---

---XXXXXVXXXXXXXXXXXVXXXXMXXXXXXXIXKXXXXHLVXRLXGGMQIFVXTLXGK
TITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTXHLVL
RLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGI

Frame B:
kfifiiqilnsyfiflyivtfhkkkkkkkx*kxxfxekk---

---xxxxxxxxxxxxxxxxwxxxxxxxxxxxxxxxxxxxxi*sxd*xvvckflsxpsxvr
llhxklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmvvlslittfkrnplsi*fs
d*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkvs

Frame C:
nsfllyky*ihilffyil*HFIKKKKKKKXKKXXFXKKK---

---xxxxxxxxxxxxxxxxgxxxxxxxxxxixhxkxxxxxfsxxixrwyanfcxnpxw*d
yytxs*rf**h*ec*sqnprqrrystrsttshfrr*tiggwsysl*lqhskgihxpfssq
ikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrryp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM254 (VFM254Q) /CSM/VF/VFM2-C/VFM254Q.Seq.d/                        682   0.0
VFL296 (VFL296Q) /CSM/VF/VFL2-D/VFL296Q.Seq.d/                        682   0.0
VFK823 (VFK823Q) /CSM/VF/VFK8-A/VFK823Q.Seq.d/                        682   0.0
VFJ305 (VFJ305Q) /CSM/VF/VFJ3-A/VFJ305Q.Seq.d/                        682   0.0
VFI713 (VFI713Q) /CSM/VF/VFI7-A/VFI713Q.Seq.d/                        682   0.0
VFD579 (VFD579Q) /CSM/VF/VFD5-D/VFD579Q.Seq.d/                        682   0.0
VFC105 (VFC105Q) /CSM/VF/VFC1-A/VFC105Q.Seq.d/                        682   0.0
VFB295 (VFB295Q) /CSM/VF/VFB2-D/VFB295Q.Seq.d/                        682   0.0
SSC715 (SSC715Q) /CSM/SS/SSC7-A/SSC715Q.Seq.d/                        682   0.0
SSC231 (SSC231Q) /CSM/SS/SSC2-B/SSC231Q.Seq.d/                        682   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(M19491) Slime mold (D.discoideum) ubiquitin p229C/pLK229 ge...   682   0.0    1
(AU039472) Dictyostelium discoideum slug cDNA, clone SLH848.      682   0.0    1
(AU034873) Dictyostelium discoideum slug cDNA, clone SLE625.      682   0.0    1
(AU034109) Dictyostelium discoideum slug cDNA, clone SLB752.      682   0.0    1
(C91993) Dictyostelium discoideum slug cDNA, clone SSC715.        682   0.0    1
(C91920) Dictyostelium discoideum slug cDNA, clone SSC231.        682   0.0    1
(BJ434972) Dictyostelium discoideum cDNA clone:ddv25k14, 3' ...   682   0.0    1
(BJ434123) Dictyostelium discoideum cDNA clone:ddv23o24, 3' ...   682   0.0    1
(BJ433538) Dictyostelium discoideum cDNA clone:ddv22n06, 3' ...   682   0.0    1
(BJ432582) Dictyostelium discoideum cDNA clone:ddv19j01, 3' ...   682   0.0    1
dna update 2009. 4. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   228   1e-58
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   228   1e-58
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   228   1e-58
B27806(B27806) ubiquitin (clone lambda229) - slime mold (Dictyos...   226   5e-58
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   226   5e-58
AM117573_1(AM117573|pid:none) Paralvinella grasslei partial gene...   218   1e-55
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   217   2e-55
AF517848_1(AF517848|pid:none) Griffithsia japonica isolate Gj526...   217   2e-55
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   217   2e-55
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   216   3e-55
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFL606 is

5' end seq. ID AFL606F
5' end seq. 
>AFL606F.Seq
AAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAAC
ATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNNNTTTTTNGAAAAAAAAAA
XXXXXXXXXX
Length of 5' end seq. 130
3' end seq. ID AFL606Z
3' end seq. 
>AFL606Z.Seq
XXXXXXXXXXTNNNNNNNNNNNNNNGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GGTNNNNNNTTNNNANATGNTNGNNTNTNTNTNATTNNNCATTNNAAAGNNATNNNNTNT
NCATTTAGTCNTNAGATTAANAGGTGGTATGCAAATTTTTGTCANAACCCTCANTGGTAA
GACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCA
AGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGA
GGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTNTCCATTTAGTTCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACT
CGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGG
TATCCC
Length of 3' end seq. 486
Connected seq. ID AFL606P
Connected seq. 
>AFL606P.Seq
AAAATTCATTTTTATTATACAAATATTAAATTCATATTTTATTTTTTTATATATTGTAAC
ATTTCATAAAAAAAAAAAAAAAAAAAAAANTTAAAAAANCNNNTTTTTNGAAAAAAAAAA
----------TNNNNNNNNNNNNNNGTNTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GGTNNNNNNTTNNNANATGNTNGNNTNTNTNTNATTNNNCATTNNAAAGNNATNNNNTNT
NCATTTAGTCNTNAGATTAANAGGTGGTATGCAAATTTTTGTCANAACCCTCANTGGTAA
GACTATTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCA
AGACAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGA
GGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTNTCCATTTAGTTCT
CAGATTAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACT
CGAAGTTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGG
TATCCC
Length of connected seq. 596
Full length Seq ID -
Full length Seq. -
Length of full length seq. -