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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ558
Library SS
(Link to library)
Clone ID SSJ558
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10309-1
Original site URL
Representative seq. ID SSJ558E
(Link to Original site)
Representative DNA sequence 
>SSJ558 (SSJ558Q) /CSM/SS/SSJ5-C/SSJ558Q.Seq.d/
TAAACACACAACATCATTCGTTCGATTTAATTGTTGTGAATAAATTTAAAAAAGACTTTG
TATATTTAATTATAATAATTTAAAAAATGATCAGCAGATTCTTTAAACCATCTTTAGTTA
AAAACTGTCGTACATTTGCTACATACAATACAGTTAATTCTACAACATCATTCCCAACTT
CACATTTTGAAAAATATAGAGCAGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTG
CTTATTTAGTTGTAGGTGGTGCTGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTG
TCACAGCATTAAGTACAATGTCACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAG
TTGATCTTAGTGGTATCCCAGAATCAACCGTTGTAAAGTGGAGAGGTAAACCATTATTCA
TTCGTCACAGATCCGCTGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAACACTCC
CAGATCCACAAGCTGATAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAGTTGGTG
TTTGCACTCATTTAGGTTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTTGGTATT
GTCCATGTCATGGTTCTCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTGCCCCAA
TGAACTTAATCGTTCCACCATATAAATTCATTACTTCCGATAAGATAAAATCATTGTTGG
TGATGAATAAATTTAAATATTCCATTTAAATAATAATATAATAATAATAATACTTTTTCA
AAAATACACGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATCAAAAAAAATAATACTCACAATATTTAAAAAACAATAACTTTTTTT
TTCCAAAAACAAAATTCAATATATACATAAAATAGTGCTGTACATAAATCTTTAAATAAT
TTTTGGTACAGCTGTTAAATTACAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
ntqhhsfdlivvnkfkkdfvyliiii*KMISRFFKPSLVKNCRTFATYNTVNSTTSFPTS
HFEKYRAEKNEVDPENRGFAYLVVGGAGAGLAAIAKNTVVTALSTMSPGQDILALSSVEV
DLSGIPESTVVKWRGKPLFIRHRSAEEISESQAVQLSTLPDPQADNARSKVPEWIILVGV
CTHLGCIPISGGGDYNGWYCPCHGSHYDNAGRIRKGPAPMNLIVPPYKFITSDKIKSLLV
MNKFKYSI*iii****yffkntrnnnnnnnnnnnnnnnnnnnnnqkk*ysqylknnnfff
pktkfniyik*cct*ifk*flvqllnyk
Translated Amino Acid sequence (All Frames) 
Frame A:
*thniirsi*ll*inlkktlyi*l**fkk*sadslnhl*lktvvhllhtiqlilqhhsql
hilknieqkrmkliqrtvdlli*l*vvlvlv*qllprtllsqh*vqchqvkiflpyhqlk
lilvvsqnqpl*sgevnhysfvtdplkkslnhklsnyqhsqihklitlvqkyqnglf*lv
fali*vvsqfqvvvitmvgivhvmvltmitlvvlervlpq*t*sfhhinsllpir*nhcw
**inlnipfk**ynnnntfskihviiiiiiiiiiiiiiiiiiiiikknnthni*ktitff
fqkqnsiyt*nsavhkslnnfwysc*it


Frame B:
khttsfvrfncce*i*krlcifnynnlkndqqil*tifs*klsyicyiqys*fyniipnf
tf*ki*srke*s*srepwiclfscrwcwcwfssycqehcchsikynvtrsryscliis*s
*s*wyprinrckver*tiihssqir*rnl*itscpiintprsts**rsfkstrmdyfswc
lhsfrlypnfrww*lqwlvlsmswfsl**rwsy*kgscpnelnrsti*ihyfr*dkiivg
de*i*ifhlnnniiiiilfqkyt*********************skkiiltifkkq*lff
sknkiqyihkivlyinl*iifgtavklq


Frame C:
ntqhhsfdlivvnkfkkdfvyliiii*KMISRFFKPSLVKNCRTFATYNTVNSTTSFPTS
HFEKYRAEKNEVDPENRGFAYLVVGGAGAGLAAIAKNTVVTALSTMSPGQDILALSSVEV
DLSGIPESTVVKWRGKPLFIRHRSAEEISESQAVQLSTLPDPQADNARSKVPEWIILVGV
CTHLGCIPISGGGDYNGWYCPCHGSHYDNAGRIRKGPAPMNLIVPPYKFITSDKIKSLLV
MNKFKYSI*iii****yffkntrnnnnnnnnnnnnnnnnnnnnnqkk*ysqylknnnfff
pktkfniyik*cct*ifk*flvqllnyk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ558 (SSJ558Q) /CSM/SS/SSJ5-C/SSJ558Q.Seq.d/                       1437   0.0
VFK857 (VFK857Q) /CSM/VF/VFK8-C/VFK857Q.Seq.d/                       1334   0.0
VSI365 (VSI365Q) /CSM/VS/VSI3-C/VSI365Q.Seq.d/                       1271   0.0
VSJ422 (VSJ422Q) /CSM/VS/VSJ4-A/VSJ422Q.Seq.d/                        995   0.0
SSJ683 (SSJ683Q) /CSM/SS/SSJ6-D/SSJ683Q.Seq.d/                        963   0.0
VSG619 (VSG619Q) /CSM/VS/VSG6-A/VSG619Q.Seq.d/                        821   0.0
VFG870 (VFG870Q) /CSM/VF/VFG8-C/VFG870Q.Seq.d/                        293   3e-78
SSE810 (SSE810Q) /CSM/SS/SSE8-A/SSE810Q.Seq.d/                        264   2e-69
VSE580 (VSE580Q) /CSM/VS/VSE5-D/VSE580Q.Seq.d/                         42   0.016
VSF123 (VSF123Q) /CSM/VS/VSF1-A/VSF123Q.Seq.d/                         40   0.063
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BU769398|    Structure Of A Water Soluble Fragment Of The Rieske Iron-Sulfur Protein Of The Bovine Heart Mitochondrial Cytochrome Bc1-Complex, mRNA sequence.    42  3e-04  2
BU769171|    Structure Of A Water Soluble Fragment Of The Rieske Iron-Sulfur Protein Of The Bovine Heart Mitochondrial Cytochrome Bc1-Complex, mRNA sequence.    42  3e-04  2
BU715697| RIKEN cDNA 4430402G14 gene [Mus musculus], mRNA sequence.    42  4e-04  2
AV949482|AV949482.1 Ciona intestinalis cDNA, clone:ciad02g14, 5' end, single read.    40  0.001  2
AV863468|AV863468.1 Ciona intestinalis cDNA, clone:rcieg48m23, 3' end, single read.    40  0.001  2
BW065930|BW065930.1 Ciona intestinalis cDNA, clone:rciad096o09, 3' end, single read.    40  0.002  2
AV861919|AV861919.1 Ciona intestinalis cDNA, clone:rcieg31i22, 3' end, single read.    40  0.002  2
BP020366|BP020366.1 Ciona intestinalis cDNA, clone:rcits35c13, 3' end, single read.    40  0.002  2
AV866287|AV866287.1 Ciona intestinalis cDNA, clone:rcieg45e05, 3' end, single read.    40  0.002  2
BW026881|BW026881.1 Ciona intestinalis cDNA, clone:rcibd084p17, 3' end, single read.    40  0.002  2
dna update 2003. 9. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU928180_593(CU928180|pid:none) Kluyveromyces thermotolerans str...   202   1e-50
CR380955_126(CR380955|pid:none) Candida glabrata strain CBS138 c...   196   1e-48
CR382125_981(CR382125|pid:none) Kluyveromyces lactis strain NRRL...   195   2e-48
(P08067) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   194   4e-48
AY387520_1(AY387520|pid:none) Pithecia irrorata ubiquinol-cytoch...   194   5e-48
AY387524_1(AY387524|pid:none) Nycticebus coucang ubiquinol-cytoc...   194   5e-48
(Q69BK2) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   192   1e-47
AY387522_1(AY387522|pid:none) Tarsius syrichta ubiquinol-cytochr...   192   1e-47
(P13272) RecName: Full=Cytochrome b-c1 complex subunit Rieske, m...   192   2e-47
A32296(A32296) ubiquinol-cytochrome-c reductase (EC 1.10.2.2) Ri...   191   3e-47
protein update 2009. 7. 8
PSORT 

 psg: 0.57  gvh: 0.30  alm: 0.31  top: 0.67  tms: 0.13  mit: 0.58  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: plasma membrane
	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 12.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for SSJ558 is pla
5' end seq. ID SSJ558F
5' end seq. 
>SSJ558F.Seq
TAAACACACAACATCATTCGTTCGATTTAATTGTTGTGAATAAATTTAAAAAAGACTTTG
TATATTTAATTATAATAATTTAAAAAATGATCAGCAGATTCTTTAAACCATCTTTAGTTA
AAAACTGTCGTACATTTGCTACATACAATACAGTTAATTCTACAACATCATTCCCAACTT
CACATTTTGAAAAATATAGAGCAGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTG
CTTATTTAGTTGTAGGTGGTGCTGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTG
TCACAGCATTAAGTACAATGTCACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAG
TTGATCTTAGTGGTATCCCAGAATCAACCGCTGTTGTTGTAAAGTGGAGAGGTAAACCAT
TATTCATTCGTCACAGATCCGCTGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAA
CACTCCCAGATCCACAAGCTGATAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAG
TTGGTGTTTGCACTCATTTAGGTTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTT
GGTATTGTCCATGTCATGGTTCTCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTG
CCCCAATGAACTTAATCGTTCCACCATATAAATTCATTACTTCCGATAA----------
Length of 5' end seq. 709
3' end seq. ID SSJ558Z
3' end seq. 
>SSJ558Z.Seq
----------GTTGTAAAGTGGAGAGGTAAACCATTATTCATTCGTCACAGATCCGCTGA
AGAAATCTCTGAATCACAAGCTGTCCAATTATCAACACTCCCAGATCCACAAGCTGATAA
CGCTCGTTCAAAAGTACCAGAATGGATTATTTTAGTTGGTGTTTGCACTCATTTAGGTTG
TATCCCAATTTCAGGTGGTGGTGATTACAATGGTTGGTATTGTCCATGTCATGGTTCTCA
CTATGATAACGCTGGTCGTATTAGAAAGGGTCCTGCCCCAATGAACTTAATCGTTCCACC
ATATAAATTCATTACTTCCGATAAAATCATTGTTGGTGATGAATAAATTTAAATATTCCA
TTTAAATAATAATATAATAATAATAATACTTTTTCAAAAATACACGTAATAATAATAATA
ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATCAAAAAAAAT
AATACTCACAATATTTAAAAAACAATAACTTTTTTTTTCCAAAAACAAAATTCAATATAT
ACATAAAATAGTGCTGTACATAAATCTTTAAATAATTTTTGGTACAGCTGTTAAATTACA
AAAAAACAATAC
Length of 3' end seq. 602
Connected seq. ID SSJ558P
Connected seq. 
>SSJ558P.Seq
TAAACACACAACATCATTCGTTCGATTTAATTGTTGTGAATAAATTTAAAAAAGACTTTG
TATATTTAATTATAATAATTTAAAAAATGATCAGCAGATTCTTTAAACCATCTTTAGTTA
AAAACTGTCGTACATTTGCTACATACAATACAGTTAATTCTACAACATCATTCCCAACTT
CACATTTTGAAAAATATAGAGCAGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTG
CTTATTTAGTTGTAGGTGGTGCTGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTG
TCACAGCATTAAGTACAATGTCACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAG
TTGATCTTAGTGGTATCCCAGAATCAACCGCTGTTGTTGTAAAGTGGAGAGGTAAACCAT
TATTCATTCGTCACAGATCCGCTGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAA
CACTCCCAGATCCACAAGCTGATAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAG
TTGGTGTTTGCACTCATTTAGGTTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTT
GGTATTGTCCATGTCATGGTTCTCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTG
CCCCAATGAACTTAATCGTTCCACCATATAAATTCATTACTTCCGATAA----------G
TTGTAAAGTGGAGAGGTAAACCATTATTCATTCGTCACAGATCCGCTGAAGAAATCTCTG
AATCACAAGCTGTCCAATTATCAACACTCCCAGATCCACAAGCTGATAACGCTCGTTCAA
AAGTACCAGAATGGATTATTTTAGTTGGTGTTTGCACTCATTTAGGTTGTATCCCAATTT
CAGGTGGTGGTGATTACAATGGTTGGTATTGTCCATGTCATGGTTCTCACTATGATAACG
CTGGTCGTATTAGAAAGGGTCCTGCCCCAATGAACTTAATCGTTCCACCATATAAATTCA
TTACTTCCGATAAAATCATTGTTGGTGATGAATAAATTTAAATATTCCATTTAAATAATA
ATATAATAATAATAATACTTTTTCAAAAATACACGTAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATCAAAAAAAATAATACTCACAA
TATTTAAAAAACAATAACTTTTTTTTTCCAAAAACAAAATTCAATATATACATAAAATAG
TGCTGTACATAAATCTTTAAATAATTTTTGGTACAGCTGTTAAATTACAAAAAAACAATA
C
Length of connected seq. 1311
Full length Seq ID SSJ558E
Full length Seq. 
>SSJ558E.Seq
TAAACACACAACATCATTCGTTCGATTTAATTGTTGTGAATAAATTTAAAAAAGACTTTG
TATATTTAATTATAATAATTTAAAAAATGATCAGCAGATTCTTTAAACCATCTTTAGTTA
AAAACTGTCGTACATTTGCTACATACAATACAGTTAATTCTACAACATCATTCCCAACTT
CACATTTTGAAAAATATAGAGCAGAAAAGAATGAAGTTGATCCAGAGAACCGTGGATTTG
CTTATTTAGTTGTAGGTGGTGCTGGTGCTGGTTTAGCAGCTATTGCCAAGAACACTGTTG
TCACAGCATTAAGTACAATGTCACCAGGTCAAGATATTCTTGCCTTATCATCAGTTGAAG
TTGATCTTAGTGGTATCCCAGAATCAACCGTTGTAAAGTGGAGAGGTAAACCATTATTCA
TTCGTCACAGATCCGCTGAAGAAATCTCTGAATCACAAGCTGTCCAATTATCAACACTCC
CAGATCCACAAGCTGATAACGCTCGTTCAAAAGTACCAGAATGGATTATTTTAGTTGGTG
TTTGCACTCATTTAGGTTGTATCCCAATTTCAGGTGGTGGTGATTACAATGGTTGGTATT
GTCCATGTCATGGTTCTCACTATGATAACGCTGGTCGTATTAGAAAGGGTCCTGCCCCAA
TGAACTTAATCGTTCCACCATATAAATTCATTACTTCCGATAAGATAAAATCATTGTTGG
TGATGAATAAATTTAAATATTCCATTTAAATAATAATATAATAATAATAATACTTTTTCA
AAAATACACGTAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATA
ATAATAATAATAATCAAAAAAAATAATACTCACAATATTTAAAAAACAATAACTTTTTTT
TTCCAAAAACAAAATTCAATATATACATAAAATAGTGCTGTACATAAATCTTTAAATAAT
TTTTGGTACAGCTGTTAAATTACAAA
Length of full length seq. 986