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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFB390
Library AF
(Link to library)
Clone ID AFB390
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID AFB390Z
(Link to Original site)
Representative DNA sequence 
>AFB390 (AFB390Q) /CSM/AF/AFB3-D/AFB390Q.Seq.d/
XXXXXXXXXXAAATTGGATCAGTGGTGTNANNAGTTGTTGGTGATGGTGTTCAAGGTAAA
GATGATNAAGGTNCAGTATTAAACAGATANCTNNCCATTGTTATCCACAAGAATGAAGAT
AATANAGTTGAATCCTNTNATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTAT
TGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCA
AAGGATAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---IGSVVXXVVGDGVQGKDDXGXVLNRXLXIVIHKNEDNXVESXXDSSDSVRPKANNYW
IVKNSWGTSWGIKGYILMSKDR
Translated Amino Acid sequence (All Frames) 
Frame A:
---nwisgvxscw*wcsr*r*xrxsikqixxhcypqe*r*xs*ilx*fi**c*tkgk*ll
dr*kfmgylmgykrlhfnvkg*


Frame B:
---IGSVVXXVVGDGVQGKDDXGXVLNRXLXIVIHKNEDNXVESXXDSSDSVRPKANNYW
IVKNSWGTSWGIKGYILMSKDR


Frame C:
---ldqwcxxllvmvfkvkmxkvqy*tdxxpllstrmkiixlnpxmihlivldqrqiiig
slkihgvphgv*kvtf*cqri
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFB390 (AFB390Q) /CSM/AF/AFB3-D/AFB390Q.Seq.d/                        408   e-113
SSM544 (SSM544Q) /CSM/SS/SSM5-B/SSM544Q.Seq.d/                        359   1e-98
SSM471 (SSM471Q) /CSM/SS/SSM4-C/SSM471Q.Seq.d/                        359   1e-98
SSL687 (SSL687Q) /CSM/SS/SSL6-D/SSL687Q.Seq.d/                        359   1e-98
SSK734 (SSK734Q) /CSM/SS/SSK7-B/SSK734Q.Seq.d/                        359   1e-98
SSK727 (SSK727Q) /CSM/SS/SSK7-B/SSK727Q.Seq.d/                        359   1e-98
SSK657 (SSK657Q) /CSM/SS/SSK6-C/SSK657Q.Seq.d/                        359   1e-98
SSK481 (SSK481Q) /CSM/SS/SSK4-D/SSK481Q.Seq.d/                        359   1e-98
SSK121 (SSK121Q) /CSM/SS/SSK1-A/SSK121Q.Seq.d/                        359   1e-98
SSJ872 (SSJ872Q) /CSM/SS/SSJ8-C/SSJ872Q.Seq.d/                        359   1e-98
own update 2001. 9. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X03344|X03344.1 Dictyostelium discoideum mRNA for cysteine proteinase 2.   359  1e-95  1
M16039|M16039.1 Dictyostelium discoideum pst-cath gene encoding pst-cathepsin, complete cds.   325  5e-88  2
BJ171907|BJ171907.1 Physcomitrella patens subsp. patens cDNA clone:pph30i20, 3' end, single read.    90  4e-29  2
L36205|L36205.1 Dictyostelium discoideum cysteine proteinase CP5 mRNA, complete cds.    88  6e-14  1
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    88  3e-13  3
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    82  3e-12  1
L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    66  2e-07  1
U72745|U72745.1 Dictyostelium discoideum cysteine proteinase (cprF) mRNA, complete cds.    46  3e-06  2
BP188323|BP188323.1 Dugesia japonica cDNA, clone: 02616_HH, expressed in the head.    50  0.012  1
CB398740|CB398740.1 OSTR208E2_2 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46  0.19  1
dna update 2003. 7.23
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...    95   6e-19
L36204_1(L36204|pid:none) Dictyostelium discoideum cysteine prot...    57   2e-07
(P54640) RecName: Full=Cysteine proteinase 5;          EC=3.4.22...    56   3e-07
L36205_1(L36205|pid:none) Dictyostelium discoideum cysteine prot...    56   3e-07
(Q94503) RecName: Full=Cysteine proteinase 6;          EC=3.4.22...    55   7e-07
(Q94504) RecName: Full=Cysteine proteinase 7;          EC=3.4.22...    54   1e-06
AB236968_1(AB236968|pid:none) Carassius auratus mRNA for catheps...    52   6e-06
BC097257_1(BC097257|pid:none) Rattus norvegicus cathepsin Q-like...    51   1e-05
AY515271_1(AY515271|pid:none) Taenia solium cathepsin L-like cys...    50   2e-05
AB441815_1(AB441815|pid:none) Taenia solium clp gene for catheps...    50   2e-05
protein update 2009. 3.27
PSORT 

 psg: 0.75  gvh: 0.57  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.08  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for AFB390 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFB390Z
3' end seq. 
>AFB390Z.Seq
----------AAATTGGATCAGTGGTGTNANNAGTTGTTGGTGATGGTGTTCAAGGTAAA
GATGATNAAGGTNCAGTATTAAACAGATANCTNNCCATTGTTATCCACAAGAATGAAGAT
AATANAGTTGAATCCTNTNATGATTCATCTGATAGTGTTAGACCAAAGGCAAATAATTAT
TGGATCGTTAAAAATTCATGGGGTACCTCATGGGGTATAAAAGGTTACATTTTAATGTCA
AAGGATAGA
Length of 3' end seq. 239
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -