SSJ513
Library SS
(Link to library)
Clone ID SSJ513
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SSJ513Z
(Link to Original site)
Representative DNA sequence
>SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/
XXXXXXXXXXATTATGTAATGGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTG
GTCTTAGTAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATT
ATGTTGCACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAA
TTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAA
ACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTC
ATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAAC
GTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTG
GTTCTGCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAA
GAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAAT
sequence update 1998. 6.17
Translated Amino Acid sequence
---LCNGEGEDMTIKIADFGLSKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSI
GVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQR
HTAKQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i*****


Translated Amino Acid sequence (All Frames)
Frame A:
---LCNGEGEDMTIKIADFGLSKIFGTGEALETSCGTPDYVAPEVLTGGSYDNAVDMWSI
GVITYILLCGFPPFYASSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQR
HTAKQCLDDLWLSGSDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i*****


Frame B:
---yvmvkvki*qsklqilvlvkylelvkhwkqvvvhqimlhqkf*lvvhmimqsicgql
vslpifyyvvshhsmlhlktyylkkf*plimisqnqnglmslnmpklslet*lskiqinv
ilpnnvlmtfgslvvinqlvlllistlislkr*rnimtkeevvnlqiikfnnnnn


Frame C:
---m*w*r*rydnqncrfws**niwnw*signklwytrlcctrsfnwwfi**csryvvnw
chylyfimwfptilcfisklii*knfnr*l*fprtrmdscl*tcqsfh*klncqrsrsts
ycqtms**plalw**sinwfcc*splsfr*kdeei**pkkrwsifk*lnliiii


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/ 971 0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/ 971 0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/ 971 0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/ 963 0.0
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/ 955 0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/ 952 0.0
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/ 928 0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/ 924 0.0
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/ 910 0.0
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/ 910 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 971 0.0 1
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds. 84 5e-27 3
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 7e-11 3
AB118103|AB118103.1 Entamoeba histolytica gene for hypothetical protein, complete cds, clone:Eh-2109. 52 8e-11 3
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 2e-10 2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 50 3e-06 7
BH146759|BH146759.1 ENTPS59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 3e-05 2
BH164301|BH164301.1 ENTSK07TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 3e-05 2
AZ693041|AZ693041.1 ENTJJ36TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 48 3e-05 2
AZ676962|AZ676962.1 ENTJV60TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 4e-04 2
dna update 2004. 2.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser... 346 2e-94
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso... 168 6e-41
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f... 159 3e-38
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m... 154 1e-36
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-... 154 1e-36
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C... 153 2e-36
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-... 153 3e-36
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina... 152 4e-36
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina... 152 4e-36
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO... 152 4e-36
protein update 2009. 6.14
PSORT

psg: 0.75 gvh: 0.34 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.12 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
40.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SSJ513 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ513Z
3' end seq.
>SSJ513Z.Seq
----------ATTATGTAATGGTGAAGGTGAAGATATGACAATCAAAATTGCAGATTTTG
GTCTTAGTAAAATATTTGGAACTGGTGAAGCATTGGAAACAAGTTGTGGTACACCAGATT
ATGTTGCACCAGAAGTTTTAACTGGTGGTTCATATGATAATGCAGTCGATATGTGGTCAA
TTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCATTCTATGCTTCATCTCAAA
ACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCCCAGAACCAGAATGGACTC
ATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAAC
GTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTG
GTTCTGCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAA
GAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAAT
Length of 3' end seq. 518
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -