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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ472
Library SS
(Link to library)
Clone ID SSJ472
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U15931-1
Original site URL
Representative seq. ID SSJ472Z
(Link to Original site)
Representative DNA sequence 
>SSJ472 (SSJ472Q) /CSM/SS/SSJ4-C/SSJ472Q.Seq.d/
XXXXXXXXXXTAGTATATAATTACAATTGCAAAGAGATTGATTACCAAGAATGGATTGAA
TTAGTTTCAAAATCAAATGGAATGTCTTCCAAAAGATATTCAACATTCCACATTCACGAT
ATTCAAAATTTAATGGTATCAAATTTTAAAATCAATAGTTTATTCAAAATGTCAAATAGC
ACAAAAGAATTATTAACTTCAATTGGTTCTTATAATCATCAAGATTGGGAAATTAATGAA
TCAATCATTTTAAAAAATATTAATAATAACAATAACTAATTAAAGATAATAAAAAAAAAA
AGATTAATCTAAGTAAAAATAAAAAAA
sequence update 1998. 1.29
Translated Amino Acid sequence 
---VYNYNCKEIDYQEWIELVSKSNGMSSKRYSTFHIHDIQNLMVSNFKINSLFKMSNST
KELLTSIGSYNHQDWEINESIILKNINNNNN*lkiikkkrli*vkikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---si*lqlqrd*lprmd*isfkikwnvfqkifniphsryskfngikf*nq*fiqnvk*h
kriinfnwfl*ssrlgn**inhfkky***q*likdnkkkkinlsknkk


Frame B:
---VYNYNCKEIDYQEWIELVSKSNGMSSKRYSTFHIHDIQNLMVSNFKINSLFKMSNST
KELLTSIGSYNHQDWEINESIILKNINNNNN*lkiikkkrli*vkikk


Frame C:
---yiitiakrlitkngln*fqnqmeclpkdiqhstftifki*wyqilksivyskcqiaq
kny*lqlvliiikigklmnqsf*kiliititn*r**kkkd*sk*k*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ472 (SSJ472Q) /CSM/SS/SSJ4-C/SSJ472Q.Seq.d/                        555   e-157
SFF732 (SFF732Q) /CSM/SF/SFF7-B/SFF732Q.Seq.d/                        363   1e-99
SSE749 (SSE749Q) /CSM/SS/SSE7-C/SSE749Q.Seq.d/                        329   2e-89
CHN782 (CHN782Q) /CSM/CH/CHN7-D/CHN782Q.Seq.d/                        202   2e-51
SLC501 (SLC501Q) /CSM/SL/SLC5-A/SLC501Q.Seq.d/                         46   3e-04
SLC313 (SLC313Q) /CSM/SL/SLC3-A/SLC313Q.Seq.d/                         46   3e-04
FC-BC13 (FC-BC13Q) /CSM/FC/FC-BC/FC-BC13Q.Seq.d/                       44   0.001
FC-AL20 (FC-AL20Q) /CSM/FC/FC-AL/FC-AL20Q.Seq.d/                       44   0.001
FC-215 (FC-215Q) /CSM/CG/CG-FC/FC-215Q.Seq.d/                          44   0.001
VSH749 (VSH749Q) /CSM/VS/VSH7-C/VSH749Q.Seq.d/                         42   0.005
own update 2003.10.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   1e-10  13
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    40   4e-07  10
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    42   2e-06  9
BX322662|BX322662.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-222C18.    62   5e-06  1
BX210540|BX210540.1 Danio rerio genomic clone DKEY-241O1, genomic survey sequence.    62   5e-06  1
BX165268|BX165268.1 Danio rerio genomic clone DKEY-168J3, genomic survey sequence.    62   5e-06  1
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            40   7e-06  17
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    38   2e-05  12
BX649370|BX649370.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44   2e-05  7
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2e-05  13
dna update 2004. 2.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_20(AC116982|pid:none) Dictyostelium discoideum chromoso...    52   6e-06
EU419359_1(EU419359|pid:none) Oryzias latipes novel immune-type ...    34   1.3
AC117075_22(AC117075|pid:none) Dictyostelium discoideum chromoso...    34   1.8
DQ889941_4(DQ889941|pid:none) Candidatus Endobugula sertula isol...    32   5.1
EF032014_8(EF032014|pid:none) Candidatus Endobugula sertula BryS...    32   6.7
protein update 2009. 2. 1
PSORT 

 psg: 0.75  gvh: 0.28  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSJ472 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ472Z
3' end seq. 
>SSJ472Z.Seq
----------TAGTATATAATTACAATTGCAAAGAGATTGATTACCAAGAATGGATTGAA
TTAGTTTCAAAATCAAATGGAATGTCTTCCAAAAGATATTCAACATTCCACATTCACGAT
ATTCAAAATTTAATGGTATCAAATTTTAAAATCAATAGTTTATTCAAAATGTCAAATAGC
ACAAAAGAATTATTAACTTCAATTGGTTCTTATAATCATCAAGATTGGGAAATTAATGAA
TCAATCATTTTAAAAAATATTAATAATAACAATAACTAATTAAAGATAATAAAAAAAAAA
AGATTAATCTAAGTAAAAATAAAAAAA
Length of 3' end seq. 317
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -