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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ466
Library SS
(Link to library)
Clone ID SSJ466
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSJ466Z
(Link to Original site)
Representative DNA sequence 
>SSJ466 (SSJ466Q) /CSM/SS/SSJ4-C/SSJ466Q.Seq.d/
XXXXXXXXXXAAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGTAAAATCAT
CATTCGTTTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCA
ACAAACAAGTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCC
AACAAGGTAGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTT
ATGTTACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTAT
TCACTGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGA
GCAAAGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACA
AATAAAATATGACATATAATAAAAAATAAAAAATAAACAAAAA
sequence update 1998. 1.29
Translated Amino Acid sequence 
---NQDSTIKQFQSVVVKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQ
QGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKS
KVL*kkknnkklipnnl*nk*nmtynkk*kink
Translated Amino Acid sequence (All Frames) 
Frame A:
---NQDSTIKQFQSVVVKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQ
QGSGSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKS
KVL*kkknnkklipnnl*nk*nmtynkk*kink


Frame B:
---iktqpsnnsnlll*nhhsflsllllllmnlmfkllstnklnnhfykmvhhh*iqpan
kvvdqvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvfliskfqidtkhqra
kyfkkkkiikn*yqiiyktnki*hiiknkk*tk


Frame C:
---srlnhqtipiccckiiirfflyccfcs*i*cssyfqqts*tiiftrwfiiikfsqpt
r*wik*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*spssr*irstkeq
stlkkkk**kintk*fikqikydi**kiknkqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ466 (SSJ466Q) /CSM/SS/SSJ4-C/SSJ466Q.Seq.d/                        718   0.0
SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/                        710   0.0
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/                        710   0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/                        710   0.0
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/                        710   0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/                        710   0.0
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/                        710   0.0
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/                        710   0.0
SSI588 (SSI588Q) /CSM/SS/SSI5-D/SSI588Q.Seq.d/                        710   0.0
SSH548 (SSH548Q) /CSM/SS/SSH5-B/SSH548Q.Seq.d/                        710   0.0
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence.   505   0.0    4
AC118188|AC118188.5 Rattus norvegicus clone CH230-208M20, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    40   0.076  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34   0.088  9
AC010073|AC010073.2 Homo sapiens chromosome 15 clone RP11-16E3 map 15q25, LOW-PASS SEQUENCE SAMPLING.    38   0.16   4
AC113655|AC113655.4 Rattus norvegicus clone CH230-307E9, *** SEQUENCING IN PROGRESS ***, 18 unordered pieces.    40   0.18   3
AC123184|AC123184.4 Rattus norvegicus clone CH230-246F14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.43   1
AC111943|AC111943.4 Rattus norvegicus clone CH230-207F15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.43   1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    46   0.43   1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence.    46   0.43   1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence.    46   0.43   1
dna update 2004. 2.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso...   116   3e-25
AE004091_3663(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co...    32   8.7
protein update 2009. 2. 1
PSORT 

 psg: 0.70  gvh: 0.54  alm: 0.14  top: 0.50  tms: 0.07  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: mitochondrial
	 20.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: cytoplasmic
	 12.0 %: Golgi
	  4.0 %: peroxisomal
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SSJ466 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ466Z
3' end seq. 
>SSJ466Z.Seq
----------AAATCAAGACTCAACCATCAAACAATTCCAATCTGTTGTTGTAAAATCAT
CATTCGTTTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCA
ACAAACAAGTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCC
AACAAGGTAGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTT
ATGTTACTGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTAT
TCACTGGTATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGA
GCAAAGTACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACA
AATAAAATATGACATATAATAAAAAATAAAAAATAAACAAAAA
Length of 3' end seq. 453
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -