>SSJ426 (SSJ426Q) /CSM/SS/SSJ4-B/SSJ426Q.Seq.d/
XXXXXXXXXXCCTTTAACATCTCTTTTCCAAGGTTCAGAATTAACATGGACCGATTATAC
AGTATCAGTAACACATAATCAAAAACCATTAAAATTAAGATTAGTTATTGGTGATCAAAA
TGAATTAAGAAGAATAAAACAAATTGAATTTAATGATGTTTTTTTAATTTGTTTTTCAGT
TGATTCAAAGGCATCATATGATAATATTGAAAAATGGAATACAGAAATTAGAAAAATCCT
GCCAACTCCAAATATAATATTAGTTGGTACAAAGATTGATTTAAGAAAAGAAGGTGGAGA
ACTTAAAAAATCAATTGTGACACAAGAAATGGGAATTGAAAAAGCAAAAGAAATAAATGC
AATAAAATATATGGAGTGTTCAACAGCAACCTACGAAGGAGTTAAAGAAGTTTTCGACGA
AAGTATAAATATCTACATGACAAAAAAGCTTTATATCCAAGATTTAAGAAAAAAAAGTTT
TTTAATTCCAAAGAAAAATACAAACAAAAAATCCTGTAAAACCNNNNANTAATAATAATA
ATAATAATAATAATAAAAAATAATTAATAGTAGAAATATAAATAGTTATCAGTTTTTCCA
AAATATGCGCATATTTTTTTTTAAATAAATAAACCCCCTTTTTTTGTAAATA

---LTSLFQGSELTWTDYTVSVTHNQKPLKLRLVIGDQNELRRIKQIEFNDVFLICFSVD
SKASYDNIEKWNTEIRKILPTPNIILVGTKIDLRKEGGELKKSIVTQEMGIEKAKEINAI
KYMECSTATYEGVKEVFDESINIYMTKKLYIQDLRKKSFLIPKKNTNKKSCKTXX*****
****kiinsrninsyqffqnmrifffk*inplfl*i

Frame A:
---l*hlfskvqn*hgpiiqyq*hiiknh*n*d*llvikmn*ee*nklnlmmff*fvfql
iqrhhmiilkngiqklekscqlqi*y*lvqrli*ekkvenlknql*hkkwelkkqkk*mq
*niwsvqqqptkelkkfstkv*ist*qksfiski*ekkvf*fqrkiqtknpvkpxxnnnn
nnnnkk*livei*ivisfskicayfflnk*tpffck


Frame B:
---fnisfprfrinmdrlysisnt*sktikikisyw*sk*ikknktn*i**cffnlffs*
fkgii**y*kmeyrn*knpanskyniswykd*fkkrrwrt*kincdtrngn*kskrnkcn
kiygvfnsnlrrs*rsfrrkykylhdkkalyprfkkkkffnskekykqkil*nxxxiiii
iiiiknn***kyk*lsvfpkyahiff*inkppffvn


Frame C:
---LTSLFQGSELTWTDYTVSVTHNQKPLKLRLVIGDQNELRRIKQIEFNDVFLICFSVD
SKASYDNIEKWNTEIRKILPTPNIILVGTKIDLRKEGGELKKSIVTQEMGIEKAKEINAI
KYMECSTATYEGVKEVFDESINIYMTKKLYIQDLRKKSFLIPKKNTNKKSCKTXX*****
****kiinsrninsyqffqnmrifffk*inplfl*i

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ426 (SSJ426Q) /CSM/SS/SSJ4-B/SSJ426Q.Seq.d/                        928   0.0
SSK745 (SSK745Q) /CSM/SS/SSK7-B/SSK745Q.Seq.d/                        908   0.0
AHN305 (AHN305Q) /CSM/AH/AHN3-A/AHN305Q.Seq.d/                        860   0.0
SSK168 (SSK168Q) /CSM/SS/SSK1-C/SSK168Q.Seq.d/                        767   0.0
SSH858 (SSH858Q) /CSM/SS/SSH8-C/SSH858Q.Seq.d/                        674   0.0
VSF553 (VSF553Q) /CSM/VS/VSF5-C/VSF553Q.Seq.d/                         44   0.003
SSK792 (SSK792Q) /CSM/SS/SSK7-D/SSK792Q.Seq.d/                         44   0.003
SSG550 (SSG550Q) /CSM/SS/SSG5-C/SSG550Q.Seq.d/                         44   0.003
SSB614 (SSB614Q) /CSM/SS/SSB6-A/SSB614Q.Seq.d/                         44   0.003
FC-IC1654 (FC-IC1654Q) /CSM/FC-IC/FC-IC1654Q.Seq.d/                    44   0.003

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF310896|AF310896.1 Dictyostelium discoideum RacJ (racJ) gene, complete cds; LagC-like protein (lagC3) gene, partial cds; and unknown genes.   601   0.0    6
L11591|L11591.1 Slime mold RacA protein mRNA, partial cds.         50   1e-06  2
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.           34   2e-06  23
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34   2e-06  13
AF310886|AF310886.1 Dictyostelium discoideum RacA (racA) gene, complete cds.    50   9e-06  2
AC142143|AC142143.15 Medicago truncatula clone mth2-25c22, WORKING DRAFT SEQUENCE, 18 unordered pieces.    34   1e-04  9
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    32   1e-04  14
AF037042|AF037042.2 Dictyostelium discoideum ras-related GTPase RacF1 (racF1) gene, complete cds; tRNA-Glu gene, complete sequence; and unknown genes.    44   4e-04  4
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    34   7e-04  12
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.           34   9e-04  24

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9GPQ9) RecName: Full=Rho-related protein racJ; Flags: Precurso...   319   4e-86
AY190720_1(AY190720|pid:none) Pagrus major ras-related C3 botuli...   100   3e-20
CS026775_1(CS026775|pid:none) Sequence 327 from Patent WO2005014...   100   3e-20
(P40792) RecName: Full=Ras-related protein Rac1; Flags: Precurso...   100   4e-20
(P15153) RecName: Full=Ras-related C3 botulinum toxin substrate ...   100   6e-20
M64595_1(M64595|pid:none) Human small G protein (Gx) mRNA, 3' end.    100   6e-20
GN079563_1(GN079563|pid:none) Sequence 166 from Patent WO2009027...   100   6e-20
AJ851813_1(AJ851813|pid:none) Gallus gallus mRNA for hypothetica...   100   6e-20
CS026539_1(CS026539|pid:none) Sequence 91 from Patent WO20050148...    99   8e-20
BX571960_4(BX571960|pid:none) Zebrafish DNA sequence from clone ...    99   8e-20

 psg: 0.75  gvh: 0.58  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSJ426 is cyt

>SSJ426Z.Seq
----------CCTTTAACATCTCTTTTCCAAGGTTCAGAATTAACATGGACCGATTATAC
AGTATCAGTAACACATAATCAAAAACCATTAAAATTAAGATTAGTTATTGGTGATCAAAA
TGAATTAAGAAGAATAAAACAAATTGAATTTAATGATGTTTTTTTAATTTGTTTTTCAGT
TGATTCAAAGGCATCATATGATAATATTGAAAAATGGAATACAGAAATTAGAAAAATCCT
GCCAACTCCAAATATAATATTAGTTGGTACAAAGATTGATTTAAGAAAAGAAGGTGGAGA
ACTTAAAAAATCAATTGTGACACAAGAAATGGGAATTGAAAAAGCAAAAGAAATAAATGC
AATAAAATATATGGAGTGTTCAACAGCAACCTACGAAGGAGTTAAAGAAGTTTTCGACGA
AAGTATAAATATCTACATGACAAAAAAGCTTTATATCCAAGATTTAAGAAAAAAAAGTTT
TTTAATTCCAAAGAAAAATACAAACAAAAAATCCTGTAAAACCNNNNANTAATAATAATA
ATAATAATAATAATAAAAAATAATTAATAGTAGAAATATAAATAGTTATCAGTTTTTCCA
AAATATGCGCATATTTTTTTTTAAATAAATAAACCCCCTTTTTTTGTAAATA