SSJ388
Library SS
(Link to library)
Clone ID SSJ388
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig -
Original site URL
Representative seq. ID SSJ388E
(Link to Original site)
Representative DNA sequence
>SSJ388 (SSJ388Q) /CSM/SS/SSJ3-D/SSJ388Q.Seq.d/
CCCGCATTCCCAAAAGTTGTTAAATCTCAACTCGTTCAAGATATTGGAGTTNCCCTTTTT
TTAGGTTCAATTGCAGGTTGTTTCTTTAAATTTGGCGTTGATAAAAAAAAGCAAAGGGAA
AGAGTTGCTTTCTTTGAAAAATACGACAAAGAAGACTTGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 1.15
Translated Amino Acid sequence
PAFPKVVKSQLVQDIGVXLFLGSIAGCFFKFGVDKKKQRERVAFFEKYDKEDL*kkkkkk
kkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
PAFPKVVKSQLVQDIGVXLFLGSIAGCFFKFGVDKKKQRERVAFFEKYDKEDL*kkkkkk
kkkkkkkkkkk


Frame B:
phsqkllnlnsfkilexpff*vqlqvvslnlalikkskgkellslknttkktckkkkkkk
kkkkkkkkkkk


Frame C:
ripksc*istrsrywsxpffrfncrlfl*iwr**kkakgkscfl*kirqrrlvkkkkkkk
kkkkkkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ388 (SSJ388Q) /CSM/SS/SSJ3-D/SSJ388Q.Seq.d/ 222 2e-57
VHN388 (VHN388Q) /CSM/VH/VHN3-D/VHN388Q.Seq.d/ 153 1e-36
AHL671 (AHL671Q) /CSM/AH/AHL6-C/AHL671Q.Seq.d/ 36 0.20
VHQ339 (VHQ339Q) /CSM/VH/VHQ3-B/VHQ339Q.Seq.d/ 34 0.79
VHM656 (VHM656Q) /CSM/VH/VHM6-C/VHM656Q.Seq.d/ 34 0.79
VHL692 (VHL692Q) /CSM/VH/VHL6-D/VHL692Q.Seq.d/ 34 0.79
VHI354 (VHI354Q) /CSM/VH/VHI3-C/VHI354Q.Seq.d/ 34 0.79
VHG138 (VHG138Q) /CSM/VH/VHG1-B/VHG138Q.Seq.d/ 34 0.79
VHE870 (VHE870Q) /CSM/VH/VHE8-C/VHE870Q.Seq.d/ 34 0.79
SSM243 (SSM243Q) /CSM/SS/SSM2-B/SSM243Q.Seq.d/ 34 0.79

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X99344|X99344.1 D.discoideum genes enocoding cytochrome C oxidase, subunits VIIe & VIIs. 92 3e-50 3
Z30963|Z30963.1 D.discoideum (AX3) cox7s gene for cytochrome oxidase subunit VIIs. 74 5e-19 2
AW780404|AW780404.1 ho05h01.x1 NCI_CGAP_Co14 Homo sapiens cDNA clone IMAGE:3036529 3' similar to SW:CHD1_MOUSE P40201 CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 ;, mRNA sequence. 44 0.75 1
AC068177|AC068177.1 Homo sapiens chromosome 1 clone RP11-215L24 map 1, LOW-PASS SEQUENCE SAMPLING. 36 0.91 3
AC130013|AC130013.3 Rattus norvegicus clone CH230-19J17, WORKING DRAFT SEQUENCE, 6 unordered pieces. 36 2.3 3
BX663528|BX663528.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 36 2.5 4
AC116954|AC116954.2 Mus musculus chromosome UNK clone RP23-387L22, WORKING DRAFT SEQUENCE, 5 unordered pieces. 42 3.0 1
CK410479|CK410479.1 AUF_IpHdk_43_c04 Head kidney cDNA library Ictalurus punctatus cDNA 5' similar to annexin A11b; annexin 11b, mRNA sequence. 42 3.0 1
G86196|G86196.1 S208P6008FG10.T0 129S1/SvImJ Mus musculus STS genomic, sequence tagged site. 42 3.0 1
AC140833|AC140833.1 Homo sapiens chromosome 16 clone RP11-935G18, WORKING DRAFT SEQUENCE, 133 unordered pieces. 42 3.0 1
dna update 2004. 2.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P20610) RecName: Full=Cytochrome c oxidase subunit 7s; ... 98 1e-19
Z30963_1(Z30963|pid:none) D.discoideum (AX3) cox7s gene for cyto... 59 5e-08
B34254(B34254)cytochrome-c oxidase (EC 1.9.3.1) chain VIIs - sli... 55 8e-07
(P20609) RecName: Full=Cytochrome c oxidase subunit 7e; ... 39 0.044
(O94705) RecName: Full=Cytochrome c oxidase subunit 7A; ... 35 1.1

protein update 2009. 3. 6
PSORT

psg: 0.68 gvh: 0.58 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

60.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: mitochondrial
4.0 %: peroxisomal

>> prediction for SSJ388 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSJ388E
Full length Seq.
>SSJ388E.Seq
CCCGCATTCCCAAAAGTTGTTAAATCTCAACTCGTTCAAGATATTGGAGTTNCCCTTTTT
TTAGGTTCAATTGCAGGTTGTTTCTTTAAATTTGGCGTTGATAAAAAAAAGCAAAGGGAA
AGAGTTGCTTTCTTTGAAAAATACGACAAAGAAGACTTGTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 214