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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ384
Library SS
(Link to library)
Clone ID SSJ384
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14686-1
Original site URL
Representative seq. ID SSJ384Z
(Link to Original site)
Representative DNA sequence 
>SSJ384 (SSJ384Q) /CSM/SS/SSJ3-D/SSJ384Q.Seq.d/
XXXXXXXXXXGCAGCTGAAATGGAATATCAAAGGAAAATGTTAGATTTACATTTGAAATC
ATCACCAAGAGAACCAATTTATTGGGTGGTATGCAACTGGTAATGATATTAATGAAAATT
CAGTTCATATTAATAATCTCTATCGTGATGAAATGGGTAATAGCACACCAATTCATTTGA
CTGTTGATACTGGACTTACAAATGATACTATGGGTATTCATGCCTATATGGCACATAATC
TCAGTTTGAATCCAGAATCATCATTGGGTTCATACTTTTCACAACTTCCATTAGAGATAT
TAACATTTGAAGCAGAGAATGCTGGTCTCGAATCAATCGCTCAAACTAAATACGATCAAC
AATCAACTAGTTTACTCTCTGAATTGGAATCACTGCAGAGGTTCTTTAACAAAACTCGAC
GAAATGCTCGAATCCATCACCTCCTATATAGAGTCTGTTGAAAAAGGTGAAATTCAAGGT
GATCCACGTCTTGGTCGTTTCCTCGCTAAAACTATTCAAGCCTTACCAAAAGCAAATGCT
CAAGTCATGGATAAAGTTATCAACAATAGTGTCAAAGATTTATTGATGATCGTTTATTTA
TCCTCTCTAACTCGTTCTCAATTAGCTGTTGCCACTAAAATTAGTCACTCTTTAAGTAAT
TAAATTATTTATTTAAATTAATTGATTAAAAAAAT
sequence update 1998. 1.14
Translated Amino Acid sequence 
---qlkwnikgkc*iyi*NHHQENQFIGWYATGNDINENSVHINNLYRDEMGNSTPIHLT
VDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQ
STSLLSELESLQRFFNKTRRNARIHHLLYRVC*kr*nsr*stswsfpr*nyssltkskcs
shg*syqq*cqrfiddrlfilsnsfsiscch*n*slfk*lnylfklid*kn
Translated Amino Acid sequence (All Frames) 
Frame A:
---qlkwnikgkc*iyi*NHHQENQFIGWYATGNDINENSVHINNLYRDEMGNSTPIHLT
VDTGLTNDTMGIHAYMAHNLSLNPESSLGSYFSQLPLEILTFEAENAGLESIAQTKYDQQ
STSLLSELESLQRFFNKTRRNARIHHLLYRVC*kr*nsr*stswsfpr*nyssltkskcs
shg*syqq*cqrfiddrlfilsnsfsiscch*n*slfk*lnylfklid*kn


Frame B:
---s*ngiskenvrftfeiitkrtnllggmqlvmilmkiqfiliisivmkwviahqfi*l
lildlqmilwvfmpiwhiisv*iqnhhwvhtfhnfh*ry*hlkqrmlvsnqslklntinn
qlvyslnwnhcrgsltkldemlesitsyiesvekgeiqgdprlgrflaktiqalpkanaq
vmdkvinnsvkdllmivylssltrsqlavatkishslsn*iiyln*likk


Frame C:
---aemeyqrkmldlhlkssprepiywvvcnw**y**kfssy**sls**ng**htnsfdc
*ywtyk*yygysclygt*sqfesriiigfilfttsirdini*srecwsrinrsn*irsti
n*ftl*igitaevl*qnstkcsnpsppi*sllkkvkfkvihvlvvsslklfkpyqkqmlk
swiklstivskiy**sfiypl*lvln*llplklvtl*viklfi*in*lkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ384 (SSJ384Q) /CSM/SS/SSJ3-D/SSJ384Q.Seq.d/                       1342   0.0
SSK488 (SSK488Q) /CSM/SS/SSK4-D/SSK488Q.Seq.d/                       1279   0.0
SSD357 (SSD357Q) /CSM/SS/SSD3-C/SSD357Q.Seq.d/                       1144   0.0
VHQ380 (VHQ380Q) /CSM/VH/VHQ3-D/VHQ380Q.Seq.d/                       1118   0.0
SLE341 (SLE341Q) /CSM/SL/SLE3-B/SLE341Q.Seq.d/                        920   0.0
SLK732 (SLK732Q) /CSM/SL/SLK7-B/SLK732Q.Seq.d/                        315   5e-85
VFH679 (VFH679Q) /CSM/VF/VFH6-D/VFH679Q.Seq.d/                        208   8e-53
SFJ401 (SFJ401Q) /CSM/SF/SFJ4-A/SFJ401Q.Seq.d/                         44   0.003
AFN356 (AFN356Q) /CSM/AF/AFN3-C/AFN356Q.Seq.d/                         44   0.003
AFJ611 (AFJ611Q) /CSM/AF/AFJ6-A/AFJ611Q.Seq.d/                         44   0.003
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM608903|BM608903.1 17000687086872 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone19600449690492 5', mRNA sequence.    36   0.002  2
BH150098|BH150098.1 ENTQE59TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40   0.009  2
CG730974|CG730974.1 1119131G04.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    36   0.009  2
BX649533|BX649533.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    46   0.014  5
BX005093|BX005093.15 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-210G13.    38   0.026  2
CG730227|CG730227.1 1119123C08.x1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    34   0.033  2
CG727146|CG727146.1 1119093D10.y1 1119 - RescueMu Grid AA Zea mays genomic, genomic survey sequence.    40   0.033  2
BG736753|BG736753.1 rk61h09.y1 Meloidogyne javanica egg pAMP1 v6 Chiapelli McCarter Meloidogyne javanica cDNA 5', mRNA sequence.    36   0.036  2
AC094767|AC094767.3 Rattus norvegicus clone CH230-5L7, *** SEQUENCING IN PROGRESS ***, 20 unordered pieces.    50   0.043  1
BH166351|BH166351.1 ENTTD31TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36   0.054  3
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54C49) RecName: Full=Eukaryotic translation initiation factor ...   189   6e-96
AY062556_1(AY062556|pid:none) Arabidopsis thaliana 26S proteasom...    74   7e-27
(O04202) RecName: Full=Eukaryotic translation initiation factor ...    72   3e-26
EF086750_1(EF086750|pid:none) Picea sitchensis clone WS02913_N21...    69   1e-25
EF146071_1(EF146071|pid:none) Populus trichocarpa clone WS0115_F...    72   1e-25
CR761801_1(CR761801|pid:none) Xenopus tropicalis finished cDNA, ...    73   5e-25
AK088537_1(AK088537|pid:none) Mus musculus 2 days neonate thymus...    69   1e-24
BC083190_1(BC083190|pid:none) Mus musculus eukaryotic translatio...    69   1e-24
AK093511_1(AK093511|pid:none) Homo sapiens cDNA FLJ36192 fis, cl...    68   1e-24
(O00303) RecName: Full=Eukaryotic translation initiation factor ...    68   1e-24
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSJ384 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ384Z
3' end seq. 
>SSJ384Z.Seq
----------GCAGCTGAAATGGAATATCAAAGGAAAATGTTAGATTTACATTTGAAATC
ATCACCAAGAGAACCAATTTATTGGGTGGTATGCAACTGGTAATGATATTAATGAAAATT
CAGTTCATATTAATAATCTCTATCGTGATGAAATGGGTAATAGCACACCAATTCATTTGA
CTGTTGATACTGGACTTACAAATGATACTATGGGTATTCATGCCTATATGGCACATAATC
TCAGTTTGAATCCAGAATCATCATTGGGTTCATACTTTTCACAACTTCCATTAGAGATAT
TAACATTTGAAGCAGAGAATGCTGGTCTCGAATCAATCGCTCAAACTAAATACGATCAAC
AATCAACTAGTTTACTCTCTGAATTGGAATCACTGCAGAGGTTCTTTAACAAAACTCGAC
GAAATGCTCGAATCCATCACCTCCTATATAGAGTCTGTTGAAAAAGGTGAAATTCAAGGT
GATCCACGTCTTGGTCGTTTCCTCGCTAAAACTATTCAAGCCTTACCAAAAGCAAATGCT
CAAGTCATGGATAAAGTTATCAACAATAGTGTCAAAGATTTATTGATGATCGTTTATTTA
TCCTCTCTAACTCGTTCTCAATTAGCTGTTGCCACTAAAATTAGTCACTCTTTAAGTAAT
TAAATTATTTATTTAAATTAATTGATTAAAAAAAT
Length of 3' end seq. 685
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -