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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ377
Library SS
(Link to library)
Clone ID SSJ377
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1
Original site URL
Representative seq. ID SSJ377Z
(Link to Original site)
Representative DNA sequence 
>SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/
XXXXXXXXXXTCAAACCTGTTGTATAGAGGTTCAATTCCACCGTAACACGGTCGCACGTA
ACTGTTGTCAACCATNTATGTGCCTCGGTGNTTGGATATCTCCATTCACAAGGGTCATTG
CACTAGAGATTTGAACCCAGAGAATCTATCTATGTAATGGTGAAGGTGACGATATGACAA
TCAAAATTGCAGATTGTGGTCTTAGTAAAATATTTGGAACTGGTGAAGCATTGGAAACAA
GTTGTGGTACACCAGATTATGTTGCACCAGAAGTTTTCACTGGTGGTTCATATGATAATG
CAGTCGATATGTGGTCAACTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCAT
TCTATGCTCCATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCC
CAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTG
TCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTG
GTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGA
AGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAATAAT
AATAAT
sequence update 1998. 1.14
Translated Amino Acid sequence 
---qtccievqfhrntvarnccqpxmclgxwispftrvialei*TQRIYLCNGEGDDMTI
KIADCGLSKIFGTGEALETSCGTPDYVAPEVFTGGSYDNAVDMWSTGVITYILLCGFPPF
YAPSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSG
SDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i*****
Translated Amino Acid sequence (All Frames) 
Frame A:
---qtccievqfhrntvarnccqpxmclgxwispftrvialei*TQRIYLCNGEGDDMTI
KIADCGLSKIFGTGEALETSCGTPDYVAPEVFTGGSYDNAVDMWSTGVITYILLCGFPPF
YAPSQNLLFEKILTADYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSG
SDQSIGSAADLHSHFAEKMKKYNDQRRGGQSSNN*i*****


Frame B:
---kpvv*rfnstvtrshvtvvnhxcasvxgylhsqgslh*rfepresiyvmvkvti*qs
klqivvlvkylelvkhwkqvvvhqimlhqkfslvvhmimqsicgqlvslpifyyvvshhs
mlhlktyylkkf*plimisqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslv
vinqlvlllistlislkr*rnimtkeevvnlqiikfnnnnn


Frame C:
---nllyrgsipp*hgrt*llstxyvprxldisihkghctrdlnpenlsm*w*r*rydnq
ncrlws**niwnw*signklwytrlcctrsfhwwfi**csryvvnwchylyfimwfptil
csisklii*knfnr*l*fprtrmdscl*tcqsfh*klncqrsrstsycqtms**plalw*
*sinwfcc*splsfr*kdeei**pkkrwsifk*lnliiii
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/                       1233   0.0
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                        961   0.0
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        954   0.0
SSC643 (SSC643Q) /CSM/SS/SSC6-B/SSC643Q.Seq.d/                        946   0.0
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        928   0.0
SSA402 (SSA402Q) /CSM/SS/SSA4-A/SSA402Q.Seq.d/                        916   0.0
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                        912   0.0
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                        906   0.0
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/                        892   0.0
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/                        892   0.0
own update 2001.11.27
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   928   0.0    3
M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds.    76   3e-22  3
AZ545332|AZ545332.1 ENTGA35TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   1e-07  3
AB118103|AB118103.1 Entamoeba histolytica gene for hypothetical protein, complete cds, clone:Eh-2109.    44   1e-07  3
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    44   2e-07  2
BH146759|BH146759.1 ENTPS59TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   2e-04  2
BH164301|BH164301.1 ENTSK07TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   2e-04  2
AZ693041|AZ693041.1 ENTJJ36TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   2e-04  2
CD130804|CD130804.1 MG1-0007T-L270-F12-U.B MG1-0007 Schistosoma mansoni cDNA clone MG1-0007T-L270-F12.B, mRNA sequence.    56   7e-04  1
CD062663|CD062663.1 MA1-0026U-R047-A02-U.G MA1-0026 Schistosoma mansoni cDNA clone MA1-0026U-R047-A02.G, mRNA sequence.    54   0.003  1
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   336   7e-92
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   160   1e-38
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...   151   1e-35
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   146   5e-34
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-...   146   5e-34
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C...   145   1e-33
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-...   145   1e-33
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...   144   2e-33
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...   144   2e-33
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...   144   2e-33
protein update 2009. 6.13
PSORT 

 psg: 0.59  gvh: 0.36  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSJ377 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ377Z
3' end seq. 
>SSJ377Z.Seq
----------TCAAACCTGTTGTATAGAGGTTCAATTCCACCGTAACACGGTCGCACGTA
ACTGTTGTCAACCATNTATGTGCCTCGGTGNTTGGATATCTCCATTCACAAGGGTCATTG
CACTAGAGATTTGAACCCAGAGAATCTATCTATGTAATGGTGAAGGTGACGATATGACAA
TCAAAATTGCAGATTGTGGTCTTAGTAAAATATTTGGAACTGGTGAAGCATTGGAAACAA
GTTGTGGTACACCAGATTATGTTGCACCAGAAGTTTTCACTGGTGGTTCATATGATAATG
CAGTCGATATGTGGTCAACTGGTGTCATTACCTATATTTTATTATGTGGTTTCCCACCAT
TCTATGCTCCATCTCAAAACTTATTATTTGAAAAAATTTTAACCGCTGATTATGATTTCC
CAGAACCAGAATGGACTCATGTCTCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTG
TCAAAGATCCAGATCAACGTCATACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTG
GTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGA
AGAAATATAATGACCAAAGAAGAGGTGGTCAATCTTCAAATAATTAAATTTAATAATAAT
AATAAT
Length of 3' end seq. 656
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -