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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ373
Library SS
(Link to library)
Clone ID SSJ373
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12912-1
Original site URL
Representative seq. ID SSJ373E
(Link to Original site)
Representative DNA sequence 
>SSJ373 (SSJ373Q) /CSM/SS/SSJ3-D/SSJ373Q.Seq.d/
GGTAACTGGTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAACAAAAGATTAGAGA
AAACATTGGTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAGAATCAACCAATGTC
AAAACAAGCTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGTAAACGTCCTGATGC
TTCAACCATTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAAGAAATGGCAAATTT
CAATGTTGAACCACCTTTTAAACCAACTTTATCAAGTGATGATGATATTTCTTATTTTAC
AAATTAAATTAAAAAATCAAAAA
sequence update 1998. 1.13
Translated Amino Acid sequence 
VTGQALFVESPDTTEQKIRENIGNWRGLLNTAVQKNQPMSKQAESLIRECIAPERKRPDA
STIKKHPFFEGINWEEMANFNVEPPFKPTLSSDDDISYFTN*ikksk
Translated Amino Acid sequence (All Frames) 
Frame A:
gnwssfic*itrynrtkd*rkhw*lersfkycstkestnvkts*ifn*rmycsrt*ts*c
fnh*ktsil*ry*lgrngkfqc*ttf*tnfik***yflfykln*kik


Frame B:
VTGQALFVESPDTTEQKIRENIGNWRGLLNTAVQKNQPMSKQAESLIRECIAPERKRPDA
STIKKHPFFEGINWEEMANFNVEPPFKPTLSSDDDISYFTN*ikksk


Frame C:
*lvklyllnhqiqpnkrlektlvigevf*ilqykrinqcqnklnl*lenvllqnvnvlml
qplknihslkvligkkwqismlnhllnqlyqvmmiflilqiklknqk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL536 (SSL536Q) /CSM/SS/SSL5-B/SSL536Q.Seq.d/                        595   e-169
SSJ373 (SSJ373Q) /CSM/SS/SSJ3-D/SSJ373Q.Seq.d/                        595   e-169
SSD274 (SSD274Q) /CSM/SS/SSD2-D/SSD274Q.Seq.d/                        595   e-169
CHA364 (CHA364Q) /CSM/CH/CHA3-C/CHA364Q.Seq.d/                        505   e-142
AFL496 (AFL496Q) /CSM/AF/AFL4-D/AFL496Q.Seq.d/                         40   0.020
VHQ454 (VHQ454Q) /CSM/VH/VHQ4-C/VHQ454Q.Seq.d/                         36   0.31
VHO636 (VHO636Q) /CSM/VH/VHO6-B/VHO636Q.Seq.d/                         36   0.31
VHO243 (VHO243Q) /CSM/VH/VHO2-B/VHO243Q.Seq.d/                         36   0.31
VHN501 (VHN501Q) /CSM/VH/VHN5-A/VHN501Q.Seq.d/                         36   0.31
VHN110 (VHN110Q) /CSM/VH/VHN1-A/VHN110Q.Seq.d/                         36   0.31
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

CF089483|CF089483.1 QHM22O10.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM22O10, mRNA sequence.    58  7e-05  1
CF090807|CF090807.1 QHM6D05.yg.ab1 QH_M sunflower H.argophyllus Helianthus argophyllus cDNA clone QHM6D05, mRNA sequence.    58  7e-05  1
CB084130|CB084130.1 hq10c11.b1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq10c11, mRNA sequence.    50  0.016  1
CB084528|CB084528.1 hq16g12.b1 Hedyotis centranthoides flower - Stage 2 (NYBG) Hedyotis centranthoides cDNA clone hq16g12, mRNA sequence.    48  0.065  1
AC130499|AC130499.4 Rattus norvegicus clone CH230-130G8, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.0  1
BG373599|BG373599.1 UI-R-CV1-bse-f-11-0-UI.s1 UI-R-CV1 Rattus norvegicus cDNA clone UI-R-CV1-bse-f-11-0-UI 3', mRNA sequence.    44  1.0  1
CC480394|CC480394.1 CH240_307P3.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_307P3, genomic survey sequence.    44  1.0  1
AC097069|AC097069.6 Rattus norvegicus clone CH230-8O2, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  1.0  1
BI299517|BI299517.1 UI-R-CV2-cgu-b-05-0-UI.s1 UI-R-CV2 Rattus norvegicus cDNA clone UI-R-CV2-cgu-b-05-0-UI 3', mRNA sequence.    44  1.0  1
BE096445|BE096445.1 UI-R-BU0-apg-b-12-0-UI.s1 UI-R-BU0 Rattus norvegicus cDNA clone UI-R-BU0-apg-b-12-0-UI 3', mRNA sequence.    44  1.0  1
dna update 2003. 7.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54FH3) RecName: Full=Probable serine/threonine-protein kinase ...   211   8e-54
AB060291_1(AB060291|pid:none) Asterina pectinifera mRNA for kina...    59   7e-08
AP007155_892(AP007155|pid:none) Aspergillus oryzae RIB40 genomic...    57   2e-07
DQ116039_1(DQ116039|pid:none) Aspergillus oryzae serine/threonin...    57   2e-07
FN357346_20(FN357346|pid:none) Schistosoma mansoni genome sequen...    57   2e-07
BC053365_1(BC053365|pid:none) Homo sapiens ribosomal protein S6 ...    56   3e-07
AK300202_1(AK300202|pid:none) Homo sapiens cDNA FLJ53918 complet...    56   3e-07
(Q6TJY3) RecName: Full=Ribosomal protein S6 kinase beta-1;      ...    56   3e-07
AK135716_1(AK135716|pid:none) Mus musculus in vitro fertilized e...    56   3e-07
(P67999) RecName: Full=Ribosomal protein S6 kinase beta-1;      ...    56   3e-07
protein update 2009. 7. 8
PSORT 

 psg: 0.75  gvh: 0.34  alm: 0.66  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.09  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi

>> prediction for SSJ373 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSJ373E
Full length Seq. 
>SSJ373E.Seq
GGTAACTGGTCAAGCTTTATTTGTTGAATCACCAGATACAACCGAACAAAAGATTAGAGA
AAACATTGGTAATTGGAGAGGTCTTTTAAATACTGCAGTACAAAAGAATCAACCAATGTC
AAAACAAGCTGAATCTTTAATTAGAGAATGTATTGCTCCAGAACGTAAACGTCCTGATGC
TTCAACCATTAAAAAACATCCATTCTTTGAAGGTATTAATTGGGAAGAAATGGCAAATTT
CAATGTTGAACCACCTTTTAAACCAACTTTATCAAGTGATGATGATATTTCTTATTTTAC
AAATTAAATTAAAAAATCAAAAA
Length of full length seq. 323