>SSJ336 (SSJ336Q) /CSM/SS/SSJ3-B/SSJ336Q.Seq.d/
ATAAAAATATAGAAAAATGTCAGGTGCTTTAAAAAATTTAGTTAAACCCAGTTATTAAAA
GTTGGTGAAAAAGTCCCAATGGATGTTCCTTTAGGTAAAGCACTCCCACCAGTCGATGGT
GTTTGTGCAATGGGCACCAAAAGTTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTG
TTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCCAAACATTTACCAGGT
TTTATTGGAAAAATCGAGGAGAAATTAAAAAAAAGGTATCCCTGAAATCTTTTGTATTGC
CCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAG
TTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATG
GTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTG
GTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAG
CAATCTTAAAACAATTATAAACATAAAATCAATCTATAAATAATCAAAAAAGAAAAAAAA
TAAAAAAATAAAAAATATAAAATTTTAGAAAAAAGTAAAAAAAAAAA

kniekcqvl*ki*lnpviksw*kspngcsfr*STPTSRWCLCNGHQKFLSGELFKDRKVV
LFAVPGAFTPTCSAQTFTRFYWKNRGEIKKKVSLKSFVLPTNDPFVMSAWGKDVNAGTAV
TLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEA
ILKQL*t*nqsinnqkrkkikk*ki*nfrkk*kkk

Frame A:
iki*knvrcfkkfs*tqllkvgekvpmdvplgkalppvdgvcamgtksfyqvnfsktvkl
fyslfqvlllqlvqpkhlpgfigkieeklkkryp*nllycppmthll*vlgvktlmqvlq
llyfqmvtlnslkrldlkwmvrlsylvktdlkdml*sltlvlsnilqlkkvvnlmyhllk
qs*nnykhkinl*iikkekk*knkkykilekskkk


Frame B:
*kyrkmsgalknlvkpsy*klvkksqwmfl*vkhshqsmvfvqwapkvfir*tfqrp*sc
fircsrcfysnlfspniyqvlleksrrn*kkgipeifciahq*picyeclg*rr*crycs
yftfrw*l*ih*kdwt*ngw*gfltw*rqiskicydp*lwccqtscs*rrw*i*ciic*s
nlktiiniksiyk*skkkknkkiknikf*kkvkkk


Frame C:
kniekcqvl*ki*lnpviksw*kspngcsfr*STPTSRWCLCNGHQKFLSGELFKDRKVV
LFAVPGAFTPTCSAQTFTRFYWKNRGEIKKKVSLKSFVLPTNDPFVMSAWGKDVNAGTAV
TLLSDGNSEFTKKIGLEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEA
ILKQL*t*nqsinnqkrkkikk*ki*nfrkk*kkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ336 (SSJ336Q) /CSM/SS/SSJ3-B/SSJ336Q.Seq.d/                       1112   0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        910   0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        904   0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/                        860   0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        860   0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/                        860   0.0
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/                        858   0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        852   0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/                        844   0.0
VSB436 (VSB436Q) /CSM/VS/VSB4-B/VSB436Q.Seq.d/                        839   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BD283099|BD283099.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    48   6e-06  2
BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48   6e-06  2
BH574218|BH574218.1 BOGJP86TR BOGJ Brassica oleracea genomic clone BOGJP86, DNA sequence.    30   0.030  3
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46   0.074  2
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46   0.078  2
AE001102|AE001102.1 Archaeoglobus fulgidus section 5 of 172 of the complete genome.    46   0.081  2
AX344560|AX344560.1 Sequence 11 from Patent WO0200932.             34   0.13   7
BH606314|BH606314.1 BOGGA89TR BOGG Brassica oleracea genomic clone BOGGA89, DNA sequence.    30   0.20   3
BH599317|BH599317.1 BOHLD60TF BOHL Brassica oleracea genomic clone BOHLD60, DNA sequence.    30   0.21   3
BH735599|BH735599.1 BOMLE82TR BO_2_3_KB Brassica oleracea genomic clone BOMLE82, DNA sequence.    30   0.25   3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...   125   1e-27
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...   123   4e-27
CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   122   7e-27
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...   122   7e-27
CP001010_161(CP001010|pid:none) Polynucleobacter necessarius sub...   122   7e-27
EF017216_7(EF017216|pid:none) Tetrathiobacter kashmirensis molyb...   120   3e-26
CP000157_1007(CP000157|pid:none) Erythrobacter litoralis HTCC259...   120   3e-26
AE017282_41(AE017282|pid:none) Methylococcus capsulatus str. Bat...   118   1e-25
CU207211_2650(CU207211|pid:none) Herminiimonas arsenicoxydans ch...   117   3e-25
CP000158_1040(CP000158|pid:none) Hyphomonas neptunium ATCC 15444...   117   4e-25

 psg: 0.73  gvh: 0.59  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSJ336 is nuc

>SSJ336E.Seq
ATAAAAATATAGAAAAATGTCAGGTGCTTTAAAAAATTTAGTTAAACCCAGTTATTAAAA
GTTGGTGAAAAAGTCCCAATGGATGTTCCTTTAGGTAAAGCACTCCCACCAGTCGATGGT
GTTTGTGCAATGGGCACCAAAAGTTTTTATCAGGTGAACTTTTCAAAGACCGTAAAGTTG
TTTTATTCGCTGTTCCAGGTGCTTTTACTCCAACTTGTTCAGCCCAAACATTTACCAGGT
TTTATTGGAAAAATCGAGGAGAAATTAAAAAAAAGGTATCCCTGAAATCTTTTGTATTGC
CCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGACGTTAATGCAGGTACTGCAG
TTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAAGATTGGACTTGAAATGGATG
GTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATATGCTATGATCCTTGACTCTG
GTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATTTGATGTATCATCTGCTGAAG
CAATCTTAAAACAATTATAAACATAAAATCAATCTATAAATAATCAAAAAAGAAAAAAAA
TAAAAAAATAAAAAATATAAAATTTTAGAAAAAAGTAAAAAAAAAAA