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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ329
Library SS
(Link to library)
Clone ID SSJ329
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15350-1
Original site URL
Representative seq. ID SSJ329Z
(Link to Original site)
Representative DNA sequence 
>SSJ329 (SSJ329Q) /CSM/SS/SSJ3-B/SSJ329Q.Seq.d/
XXXXXXXXXXAAGGTGGTGTTGGTAAAACCCCTTTTGGTCCCAACGTCCATCTTACTGGT
GAAATTCGACCCCCAGGATATATCCCCACTCTTGGTGTACCAGCCCCATCCATTAATCTT
CTACACCAATTTCGGTAAAANCCACTTACAAAGTATGGGATCCCGCTGGTACAAGAAAAA
ATTTCGGTGGTTTAAGAGATGGTTATTATATTTCAAGGTAATTGTGCCCATTATTATGTT
TGGTGGTCACATCCCGTTTTTTCATTACAAAAAATGTTCCCCAATTGGGCACTCCGGATT
TAACCGGGAGTTTGTTGAAAACCTCCCCAACGTTTTTATGGTGGGTAAACAAAGTGGATG
TTTAAAGATCAGTAAAGTCAAACCCATCCCAAAATTGTTTCCCATCGTAGATCCAATTTA
TCATACTATGATGTTTCAGCCAAATCAAATTCCAATTTCGAAAACCCATTCGTCTGGTTA
ACATCAAAACTCCTCGGTAACAAGGCTGATCACTCTCGTTCAACAACCAACCTTAAAATT
ACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGC
TGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 1.10
Translated Amino Acid sequence 
---VVLVKPLLVPTSILLVKFDPQDISPLLVYQPHPLIFYTNFGKXHLQSMGSRWYKKKF
RWFKRWLLYFKVIVPIIMFGGHIPFFHYKKCSPIGHSGFNREFVENLPNVFMVGKQSGCL
KISKVKPIPKLFPIVDPIYHTMMFQPNQIPISKTHSSG*hqnssvtrlitlvqqptlklp
etvldsnlmslyekevadaaalplpednddl*tnlkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---rwcw*npfwsqrpsyw*nstpriyphswctspih*sstpisvkxtykvwdpagtrkn
fgglrdgyyisr*lcpllclvvtsrffitknvpqlgtpdltgsllktsptflwwvnkvdv
*rsvksnpsqncfps*iqfiil*cfsqikfqfrkpirlvniktpr*qg*slsfnnqp*ny
qkpfsipt**vymkkkslmllpshyqktmmtckqi*kkkkkkkkkkkk


Frame B:
---ggvgktpfgpnvhltgeirppgyiptlgvpapsinllhqfr*xpltkygiplvqeki
svv*emviifqgncahyyvwwshpvfslqkmfpnwalri*pgvc*kppqrfygg*tkwmf
kdq*sqthpkivshrrsnlsyydvsaksnsnfenpfvwltskllgnkadhsrsttnlkit
rnrsrfqlnefi*krsr*cccppitrrq**lvnkfkkkkkkkkkkkkk


Frame C:
---VVLVKPLLVPTSILLVKFDPQDISPLLVYQPHPLIFYTNFGKXHLQSMGSRWYKKKF
RWFKRWLLYFKVIVPIIMFGGHIPFFHYKKCSPIGHSGFNREFVENLPNVFMVGKQSGCL
KISKVKPIPKLFPIVDPIYHTMMFQPNQIPISKTHSSG*hqnssvtrlitlvqqptlklp
etvldsnlmslyekevadaaalplpednddl*tnlkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ329 (SSJ329Q) /CSM/SS/SSJ3-B/SSJ329Q.Seq.d/                       1259   0.0
SSM382 (SSM382Q) /CSM/SS/SSM3-D/SSM382Q.Seq.d/                        478   e-134
SSI774 (SSI774Q) /CSM/SS/SSI7-D/SSI774Q.Seq.d/                        478   e-134
SSH886 (SSH886Q) /CSM/SS/SSH8-D/SSH886Q.Seq.d/                        478   e-134
SLA506 (SLA506Q) /CSM/SL/SLA5-A/SLA506Q.Seq.d/                        478   e-134
SSM649 (SSM649Q) /CSM/SS/SSM6-C/SSM649Q.Seq.d/                        470   e-131
SSF367 (SSF367Q) /CSM/SS/SSF3-C/SSF367Q.Seq.d/                        470   e-131
SSE374 (SSE374Q) /CSM/SS/SSE3-D/SSE374Q.Seq.d/                        470   e-131
SSD294 (SSD294Q) /CSM/SS/SSD2-D/SSD294Q.Seq.d/                        466   e-130
VSD229 (VSD229Q) /CSM/VS/VSD2-B/VSD229Q.Seq.d/                        464   e-130
own update 2004. 7.29
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

L09720|L09720.1 Dictyostelium discoideum GTP-binding protein (TC4/RAN) mRNA, complete cds.   276   e-173  10
BM275423|BM275423.1 PfESToaa68f04.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BI815073|BI815073.1 PfESToaa14a04.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BU498261|BU498261.1 PfESToab94h09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BM273404|BM273404.1 PfESToaa50c11.y1 Plasmodium falciparum 3D7 gametocyte cDNA library Plasmodium falciparum 3D7 cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BI815642|BI815642.1 PfESToaa31a10.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BI815554|BI815554.1 PfESToaa29h11.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BQ452295|BQ452295.1 PfESToaa94h01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BQ739706|BQ739706.1 PfESToab49b06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
BQ739526|BQ739526.1 PfESToab47a09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:RAN_PLAFA P38545 GTP-BINDING NUCLEAR PROTEIN RAN/TC4. ;, mRNA sequence.    44   4e-07  4
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P33519) RecName: Full=GTP-binding nuclear protein Ran; AltName:...   101   2e-20
(Q8TFK3) RecName: Full=GTP-binding nuclear protein GSP1/Ran;  &A...    57   2e-18
AF112244_1(AF112244|pid:none) Zea mays Ran-related GTP binding p...    52   1e-17
EF103373_1(EF103373|pid:none) Haliotis discus discus Ran-1-prov ...    67   5e-16
BT057518_1(BT057518|pid:none) Salmo salar clone ssal-rgb2-597-13...    67   1e-15
(O17915) RecName: Full=GTP-binding nuclear protein ran-1; AltNam...    68   1e-15
BT050245_1(BT050245|pid:none) Salmo salar clone ssal-eve-578-306...    67   1e-15
AY347864_1(AY347864|pid:none) Malus x domestica clone 12-1 small...    50   2e-15
(P52301) RecName: Full=GTP-binding nuclear protein Ran; AltName:...    66   5e-15
CP000499_469(CP000499|pid:none) Pichia stipitis CBS 6054 chromos...    63   7e-15
protein update 2009. 6.13
PSORT 

 psg: 0.92  gvh: 0.46  alm: 0.31  top: 0.33  tms: 0.13  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: mitochondrial
	 24.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSJ329 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ329Z
3' end seq. 
>SSJ329Z.Seq
----------AAGGTGGTGTTGGTAAAACCCCTTTTGGTCCCAACGTCCATCTTACTGGT
GAAATTCGACCCCCAGGATATATCCCCACTCTTGGTGTACCAGCCCCATCCATTAATCTT
CTACACCAATTTCGGTAAAANCCACTTACAAAGTATGGGATCCCGCTGGTACAAGAAAAA
ATTTCGGTGGTTTAAGAGATGGTTATTATATTTCAAGGTAATTGTGCCCATTATTATGTT
TGGTGGTCACATCCCGTTTTTTCATTACAAAAAATGTTCCCCAATTGGGCACTCCGGATT
TAACCGGGAGTTTGTTGAAAACCTCCCCAACGTTTTTATGGTGGGTAAACAAAGTGGATG
TTTAAAGATCAGTAAAGTCAAACCCATCCCAAAATTGTTTCCCATCGTAGATCCAATTTA
TCATACTATGATGTTTCAGCCAAATCAAATTCCAATTTCGAAAACCCATTCGTCTGGTTA
ACATCAAAACTCCTCGGTAACAAGGCTGATCACTCTCGTTCAACAACCAACCTTAAAATT
ACCAGAAACCGTTCTCGATTCCAACTTAATGAGTTTATATGAAAAAGAAGTCGCTGATGC
TGCTGCCCTCCCATTACCAGAAGACAATGATGACTTGTAAACAAATTTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 678
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -