>SSJ321 (SSJ321Q) /CSM/SS/SSJ3-A/SSJ321Q.Seq.d/
AGAAATGTCAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTCCCAATGGATGTTACTTT
AGGTAAAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAGTTTTATCAGGT
GAACTTTTCCAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCACTT
GTTCAGCCAAACATTTACCAGGTTTTATGAAAAATCAGAAGAAATTAAAAAAAAAAGGTA
TCTCTGAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGA
CGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAA
GATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATA
TGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATT
TGATGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAA
TAATCAAAAAAGAAAAAAAATAAAAAAATAAAAAATATAAATTTTGGGAAAAAATAAAAA
AAAAAAAAAAAAAAAAA

emsvksvikvgekvpmdvtlgkalppvdgvcamapkfyqvnfsktvklfyslfqvlllhl
fsqtftrfyekseeikkkryl*IFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKK
IGLEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsin
nqkrkkikk*ki*ilgknkkkkkkk

Frame A:
rnvs*isy*sw*kspngcyfr*stptsrwclcngtkvlsgelfqdrkvvlfavpgaftpl
vqpniyqvl*kirrn*kkkvslnllychq*picyeclg*rr*crycsyftfrw*l*ih*k
dwt*ngw*gfltw*rqiskicydp*lwccqtscs*rrw*i*ciic*snlktiiniksiyk
*skkkknkkikninfgkk*kkkkkk


Frame B:
emsvksvikvgekvpmdvtlgkalppvdgvcamapkfyqvnfsktvklfyslfqvlllhl
fsqtftrfyekseeikkkryl*IFCIATNDPFVMSAWGKDVNAGTAVTLLSDGNSEFTKK
IGLEMDGKAFLLGEDRSQRYAMILDSGVVKHLAVEEGGKFDVSSAEAILKQL*t*nqsin
nqkrkkikk*ki*ilgknkkkkkkk


Frame C:
kcqlnqllklvkksqwmll*vkhshqsmvfvqwhqsfir*tfprp*scfircsrcfystc
sakhlpgfmknqkklkkkgisesfvlppmthll*vlgvktlmqvlqllyfqmvtlnslkr
ldlkwmvrlsylvktdlkdml*sltlvlsnilqlkkvvnlmyhllkqs*nnykhkinl*i
ikkekk*knkkykfwekikkkkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ321 (SSJ321Q) /CSM/SS/SSJ3-A/SSJ321Q.Seq.d/                       1021   0.0
VSA450 (VSA450Q) /CSM/VS/VSA4-C/VSA450Q.Seq.d/                        936   0.0
VSD213 (VSD213Q) /CSM/VS/VSD2-A/VSD213Q.Seq.d/                        922   0.0
SSG643 (SSG643Q) /CSM/SS/SSG6-B/SSG643Q.Seq.d/                        922   0.0
SHJ382 (SHJ382Q) /CSM/SH/SHJ3-D/SHJ382Q.Seq.d/                        920   0.0
SSF753 (SSF753Q) /CSM/SS/SSF7-C/SSF753Q.Seq.d/                        916   0.0
VSH776 (VSH776Q) /CSM/VS/VSH7-D/VSH776Q.Seq.d/                        892   0.0
SSE376 (SSE376Q) /CSM/SS/SSE3-D/SSE376Q.Seq.d/                        890   0.0
VSD185 (VSD185Q) /CSM/VS/VSD1-D/VSD185Q.Seq.d/                        872   0.0
VHF501 (VHF501Q) /CSM/VH/VHF5-A/VHF501Q.Seq.d/                        872   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BD283099|BD283099.1 Flea head, nerve cord, hindgut and malpighian tubule nucleic acid molecules, proteins and uses thereof.    48   5e-06  2
BF779954|BF779954.1 3254-25 hindgut and Malpighian tubule cDNA library Ctenocephalides felis cDNA clone 3254-25, mRNA sequence.    48   5e-06  2
AX344572|AX344572.1 Sequence 23 from Patent WO0200932.             34   0.30   2
BX784034|BX784034.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-194O4.    46   0.59   1
BX004766|BX004766.9 Zebrafish DNA sequence from clone DKEY-5P1 in linkage group 20.    46   0.59   1
BQ476622|BQ476622.1 curculio3e06.g Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 3', mRNA sequence.    46   0.59   1
AX345182|AX345182.1 Sequence 253 from Patent WO0200928.            46   0.59   1
CG814441|CG814441.1 SOYEM04TV LargeInsertSoybeanGenLib Glycine max genomic clone H68G10:MTP18A7, genomic survey sequence.    46   0.59   1
AE001102|AE001102.1 Archaeoglobus fulgidus section 5 of 172 of the complete genome.    46   0.59   1
BQ476340|BQ476340.1 curculio3e06.b Curculio glandium cDNA Curculio glandium cDNA clone curculio3e06 5', mRNA sequence.    46   0.59   1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000083_127(CP000083|pid:none) Colwellia psychrerythraea 34H, c...    89   4e-25
GN105579_1(GN105579|pid:none) Sequence 10360 from Patent WO20090...   100   6e-25
BA000032_1293(BA000032|pid:none) Vibrio parahaemolyticus RIMD 22...    91   1e-24
AE005673_3368(AE005673|pid:none) Caulobacter crescentus CB15, co...   104   1e-24
CP000790_1683(CP000790|pid:none) Vibrio harveyi ATCC BAA-1116 ch...    88   2e-24
CP000613_3568(CP000613|pid:none) Rhodospirillum centenum SW, com...    99   2e-24
GN105571_1(GN105571|pid:none) Sequence 10352 from Patent WO20090...    89   3e-24
CP000753_4152(CP000753|pid:none) Shewanella baltica OS185, compl...    88   3e-23
CP000510_2690(CP000510|pid:none) Psychromonas ingrahamii 37, com...    87   3e-23
CP000655_172(CP000655|pid:none) Polynucleobacter necessarius sub...   110   3e-23

 psg: 0.75  gvh: 0.50  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSJ321 is cyt

>SSJ321E.Seq
AGAAATGTCAGTTAAATCAGTTATTAAAGTTGGTGAAAAAGTCCCAATGGATGTTACTTT
AGGTAAAGCACTCCCACCAGTCGATGGTGTTTGTGCAATGGCACCAAAGTTTTATCAGGT
GAACTTTTCCAAGACCGTAAAGTTGTTTTATTCGCTGTTCCAGGTGCTTTTACTCCACTT
GTTCAGCCAAACATTTACCAGGTTTTATGAAAAATCAGAAGAAATTAAAAAAAAAAGGTA
TCTCTGAATCTTTTGTATTGCCACCAATGACCCATTTGTTATGAGTGCTTGGGGTAAAGA
CGTTAATGCAGGTACTGCAGTTACTTTACTTTCAGATGGTAACTCTGAATTCACTAAAAA
GATTGGACTTGAAATGGATGGTAAGGCTTTCTTACTTGGTGAAGACAGATCTCAAAGATA
TGCTATGATCCTTGACTCTGGTGTTGTCAAACATCTTGCAGTTGAAGAAGGTGGTAAATT
TGATGTATCATCTGCTGAAGCAATCTTAAAACAATTATAAACATAAAATCAATCTATAAA
TAATCAAAAAAGAAAAAAAATAAAAAAATAAAAAATATAAATTTTGGGAAAAAATAAAAA
AAAAAAAAAAAAAAAAA