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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ266
Library SS
(Link to library)
Clone ID SSJ266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07986-1
Original site URL
Representative seq. ID SSJ266P
(Link to Original site)
Representative DNA sequence 
>SSJ266 (SSJ266Q) /CSM/SS/SSJ2-C/SSJ266Q.Seq.d/
TAAATAAATAAAAAAATAAAAAATAAAAATAAAATATATTTAAAAAAATAAATTAATAAA
ACTAAAAATAGTAAAATAAGTTGGAAAAAAAAATAAAAAATAAAAAAATAAAAAATTAAA
AATAAAAAAACTGCAAAGGACATAAAAAAACAAAAAAAAAAAAAAAAATAAAAAAATAAA
AATCGATCTTTATAATAATTTATATATTTTAATCCCTAAACAAAAATAATAGTTAATACG
AAAAAATAGATAATTTATTTAGTAATAATTTTTTTTTAAAAATATAAATAATAAGAXXXX
XXXXXXTTCGCCCATCCAATTCCAATTTTACCAATGTTTGCCTTAATTTGCGTTGCTAAA
ATTTTCGTTAGTGGTGGCCTCGATGGTGCACCCGCCCCCATTCCCATGGGCTTTAGTCAC
CATTACCCTCCAAGTCCCCATGCTGCTGGNGAAATTGATTTAAATATTTTTCCAAATGGT
GACGCCGCCGCCGTTGTTNTAAATGGAGATCCAGAAGGGGATTGCCCAAAAGATGTTGAA
AAAGAACATGGTCATGGTCATGGTCATGGGCATGGTCATAATAGTAGTAATAGTAGTTGT
AATGGTCATGGACATGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12.21
Translated Amino Acid sequence 
k*ikk*kikikyi*knkliklkivk*vgkknkk*knkklkikklqrt*knkkkkknkkik
idlynnlyilipkqk**lirknr*fi***FFFKNINNK---

---FAHPIPILPMFALICVAKIFVSGGLDGAPAPIPMGFSHHYPPSPHAAGEIDLNIFPN
GDAAAVVXNGDPEGDCPKDVEKEHGHGHGHGHGHNSSNSSCNGHGHGFKKKKKKKKKKKK
KKKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
*inkkiknknkiylkk*inktknskiswkkk*kikk*kiknkktakdikkqkkkkk*knk
nrsl**fiyfnp*tkiivntkk*iiylviiff*kyk**---

---FAHPIPILPMFALICVAKIFVSGGLDGAPAPIPMGFSHHYPPSPHAAGEIDLNIFPN
GDAAAVVXNGDPEGDCPKDVEKEHGHGHGHGHGHNSSNSSCNGHGHGFKKKKKKKKKKKK
KKKKKKKKKKKKK

Frame B:
k*ikk*kikikyi*knkliklkivk*vgkknkk*knkklkikklqrt*knkkkkknkkik
idlynnlyilipkqk**lirknr*fi***FFFKNINNK---

---spiqfqfyqclp*fallkfslvvasmvhpppfpwalvtitlqvpmllxkli*iffqm
vtppplx*meiqkgiaqkmlkknmvmvmvmgmviivvivvvmvmdmvlkkkkkkkkkkkk
kkkkkkkkkkkk

Frame C:
nk*knkk*k*nifkkin**n*k**nklekkiknkkikn*k*knckghkktkkkkkikk*k
sifiiiyif*slnknns*yekidnlfsnnfflki*iir---

---rpsnsnftnvclnlrc*nfr*wwprwctrphshgl*splpskspccwxn*fkyfskw
*rrrrcxkwrsrrglpkrc*krtwswswswaws******l*wswtwf*kkkkkkkkkkkk
kkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ266 (SSJ266Q) /CSM/SS/SSJ2-C/SSJ266Q.Seq.d/                        745   0.0
SSK308 (SSK308Q) /CSM/SS/SSK3-A/SSK308Q.Seq.d/                        309   3e-83
SFG302 (SFG302Q) /CSM/SF/SFG3-A/SFG302Q.Seq.d/                        303   2e-81
VSF729 (VSF729Q) /CSM/VS/VSF7-B/VSF729Q.Seq.d/                         42   0.011
VSI127 (VSI127Q) /CSM/VS/VSI1-B/VSI127Q.Seq.d/                         40   0.044
VSG686 (VSG686Q) /CSM/VS/VSG6-D/VSG686Q.Seq.d/                         40   0.044
VSG436 (VSG436Q) /CSM/VS/VSG4-B/VSG436Q.Seq.d/                         40   0.044
VHP231 (VHP231Q) /CSM/VH/VHP2-B/VHP231Q.Seq.d/                         40   0.044
SSB502 (SSB502Q) /CSM/SS/SSB5-A/SSB502Q.Seq.d/                         40   0.044
SLI658 (SLI658Q) /CSM/SL/SLI6-C/SLI658Q.Seq.d/                         40   0.044
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117699|AC117699.5 Mus musculus clone RP23-452G1, WORKING DRAFT SEQUENCE, 8 unordered pieces.    60   2e-07  2
D84435|D84435.1 Mus sp. mRNA for HMW prekininogen, complete cds.    52   2e-07  2
CF616032|CF616032.1 AGENCOURT_15764193 NIH_MGC_203 Mus musculus cDNA clone IMAGE:30521812 5', mRNA sequence.    52   2e-07  2
AI117632|AI117632.1 ui48c06.x1 Sugano mouse embryo mewa Mus musculus cDNA clone IMAGE:1885642 3' similar to TR:O08677 O08677 HMW PREKININOGEN PRECURSOR. ;, mRNA sequence.    52   2e-07  2
BH117528|BH117528.1 RPCI-24-253H16.TJ RPCI-24 Mus musculus genomic clone RPCI-24-253H16 , DNA sequence.    52   2e-07  2
AI195438|AI195438.1 ui50d05.y1 Sugano mouse liver mlia Mus musculus cDNA clone IMAGE:1885833 5' similar to gb:K02566 KININOGEN, LMW PRECURSOR (HUMAN);, mRNA sequence.    52   2e-07  2
AA237351|AA237351.1 mx15c10.r1 Soares mouse NML Mus musculus cDNA clone IMAGE:680274 5' similar to SW:KNH_RAT P08934 KININOGEN, HMW PRECURSOR ;, mRNA sequence.    52   2e-07  2
AI157699|AI157699.1 ud96h01.r2 Soares_NMPu Mus musculus cDNA clone IMAGE:1478737 5' similar to TR:O08677 O08677 HMW PREKININOGEN PRECURSOR. ;, mRNA sequence.    52   2e-07  2
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           44   2e-06  14
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    42   3e-06  11
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954211_307(CR954211|pid:none) Ostreococcus tauri strain OTTH05...    34   4.8
BX572606_34(BX572606|pid:none) Rhodopseudomonas palustris CGA009...    33   8.2
protein update 2009. 2. 1
PSORT 

 psg: 0.97  gvh: 0.52  alm: 0.23  top: 0.30  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 1.96  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for SSJ266 is cyt
5' end seq. ID SSJ266F
5' end seq. 
>SSJ266F.Seq
TAAATAAATAAAAAAATAAAAAATAAAAATAAAATATATTTAAAAAAATAAATTAATAAA
ACTAAAAATAGTAAAATAAGTTGGAAAAAAAAATAAAAAATAAAAAAATAAAAAATTAAA
AATAAAAAAACTGCAAAGGACATAAAAAAACAAAAAAAAAAAAAAAAATAAAAAAATAAA
AATCGATCTTTATAATAATTTATATATTTTAATCCCTAAACAAAAATAATAGTTAATACG
AAAAAATAGATAATTTATTTAGTAATAATTTTTTTTTAAAAATATAAATAATAAGA----
------
Length of 5' end seq. 296
3' end seq. ID SSJ266Z
3' end seq. 
>SSJ266Z.Seq
----------TTCGCCCATCCAATTCCAATTTTACCAATGTTTGCCTTAATTTGCGTTGC
TAAAATTTTCGTTAGTGGTGGCCTCGATGGTGCACCCGCCCCCATTCCCATGGGCTTTAG
TCACCATTACCCTCCAAGTCCCCATGCTGCTGGNGAAATTGATTTAAATATTTTTCCAAA
TGGTGACGCCGCCGCCGTTGTTNTAAATGGAGATCCAGAAGGGGATTGCCCAAAAGATGT
TGAAAAAGAACATGGTCATGGTCATGGTCATGGGCATGGTCATAATAGTAGTAATAGTAG
TTGTAATGGTCATGGACATGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 390
Connected seq. ID SSJ266P
Connected seq. 
>SSJ266P.Seq
TAAATAAATAAAAAAATAAAAAATAAAAATAAAATATATTTAAAAAAATAAATTAATAAA
ACTAAAAATAGTAAAATAAGTTGGAAAAAAAAATAAAAAATAAAAAAATAAAAAATTAAA
AATAAAAAAACTGCAAAGGACATAAAAAAACAAAAAAAAAAAAAAAAATAAAAAAATAAA
AATCGATCTTTATAATAATTTATATATTTTAATCCCTAAACAAAAATAATAGTTAATACG
AAAAAATAGATAATTTATTTAGTAATAATTTTTTTTTAAAAATATAAATAATAAGA----
------TTCGCCCATCCAATTCCAATTTTACCAATGTTTGCCTTAATTTGCGTTGCTAAA
ATTTTCGTTAGTGGTGGCCTCGATGGTGCACCCGCCCCCATTCCCATGGGCTTTAGTCAC
CATTACCCTCCAAGTCCCCATGCTGCTGGNGAAATTGATTTAAATATTTTTCCAAATGGT
GACGCCGCCGCCGTTGTTNTAAATGGAGATCCAGAAGGGGATTGCCCAAAAGATGTTGAA
AAAGAACATGGTCATGGTCATGGTCATGGGCATGGTCATAATAGTAGTAATAGTAGTTGT
AATGGTCATGGACATGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 686
Full length Seq ID -
Full length Seq. -
Length of full length seq. -