>SSJ253 (SSJ253Q) /CSM/SS/SSJ2-C/SSJ253Q.Seq.d/
XXXXXXXXXXTTCTTTGGTAAAAAACTGCCCTGGTGAATCATTTGAATACACCAAAGGTG
AAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTG
GTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAA
AATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTT
CAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACA
AAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGG
TTGCTTGCAAAGATGGTGATGCCTTTGTTCAATTGCCCAATTCCAAAACTTACTCCCCCG
GATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTT
GTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAA
AAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACATCTTTCATC
TTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTA
AATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAAAAAAAA

---SLVKNCPGESFEYTKGETVRFNNGDKWNDKFMSCLVGSNVRCNIWEHNEIDTPTPGK
FQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKV
ACKDGDAFVQLPNSKTYSPGF*nc*pfnsssntyti*lcckwkcll*ilpnnwpsysy*k
r*dipkeydcytr**yifhl*lkl*kikqyvffsl*enfk**nyefqklkkkkk

Frame A:
---SLVKNCPGESFEYTKGETVRFNNGDKWNDKFMSCLVGSNVRCNIWEHNEIDTPTPGK
FQELAQGSTNNDLTSINGLSKFQVLPGAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKV
ACKDGDAFVQLPNSKTYSPGF*nc*pfnsssntyti*lcckwkcll*ilpnnwpsysy*k
r*dipkeydcytr**yifhl*lkl*kikqyvffsl*enfk**nyefqklkkkkk


Frame B:
---lw*ktalvnhlntpkvkl*dstmvingminschvwlvqmldvtfgsimklilqlqen
sknwlkavqtmi*pq*mvfqssksyqelfngqlmlklstkliqllvhmk*pllhtklirl
lakmvmplfncpipkltppdseivshltvrqthtpydyvvngsvyfkyspttgqvtvikk
detfpknmtvtqddntsfifnlnsek*nnmffflfkktlnnkimnfrn*kkkkk


Frame C:
---fgkklpw*ii*ihqr*nckiqqw**me**ihvmfgwfkc*m*hlga**n*ysnsrki
prigsrqykq*fnlnkwsfkvpsltrsfsmgs*c*ncqqs*fncwfi*ndhysips**gc
lqrw*clcsiaqfqnllprilkllai*qfvkhihhmtml*mevftlntpqqlaklqllkk
mrhsqri*llhkmiihlsslt*tlknkticfffslrkl*iikl*iseikkkkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ253 (SSJ253Q) /CSM/SS/SSJ2-C/SSJ253Q.Seq.d/                       1291   0.0
SSC587 (SSC587Q) /CSM/SS/SSC5-D/SSC587Q.Seq.d/                       1215   0.0
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                       1211   0.0
SSJ652 (SSJ652Q) /CSM/SS/SSJ6-C/SSJ652Q.Seq.d/                       1209   0.0
SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/                       1205   0.0
AHG682 (AHG682Q) /CSM/AH/AHG6-D/AHG682Q.Seq.d/                       1185   0.0
VHG542 (VHG542Q) /CSM/VH/VHG5-B/VHG542Q.Seq.d/                       1183   0.0
VHG402 (VHG402Q) /CSM/VH/VHG4-A/VHG402Q.Seq.d/                       1183   0.0
VFG405 (VFG405Q) /CSM/VF/VFG4-A/VFG405Q.Seq.d/                       1183   0.0
AHH433 (AHH433Q) /CSM/AH/AHH4-B/AHH433Q.Seq.d/                       1183   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.   724   0.0    3
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   716   0.0    5
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   460   0.0    6
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    30   0.035  11
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5.    38   0.050  11
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    32   0.086  12
AC093004|AC093004.2 Homo sapiens 3 BAC RP11-129J11 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    48   0.17   1
CQ714974|CQ714974.1 Sequence 908 from Patent WO02068579.           48   0.17   1
AC019061|AC019061.4 Homo sapiens chromosome 3 clone RP11-129J11, WORKING DRAFT SEQUENCE, 15 unordered pieces.    48   0.17   1
AC139393|AC139393.4 Rattus norvegicus clone CH230-49L12, WORKING DRAFT SEQUENCE, 65 unordered pieces.    36   0.24   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   263   e-109
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   261   2e-97
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    64   4e-09
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    39   0.20
CP001581_2416(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   0.45
CP000559_1225(CP000559|pid:none) Methanocorpusculum labreanum Z,...    33   6.4
(A3QDB9) RecName: Full=Fatty acid/phospholipid synthesis protein...    33   6.4
AE009949_448(AE009949|pid:none) Streptococcus pyogenes MGAS8232,...    33   8.3
D89164_1(D89164|pid:none) Schizosaccharomyces pombe mRNA, partia...    33   8.4

 psg: 0.55  gvh: 0.46  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSJ253 is cyt

>SSJ253Z.Seq
----------TTCTTTGGTAAAAAACTGCCCTGGTGAATCATTTGAATACACCAAAGGTG
AAACTGTAAGATTCAACAATGGTGATAAATGGAATGATAAATTCATGTCATGTTTGGTTG
GTTCAAATGTTAGATGTAACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAA
AATTCCAAGAATTGGCTCAAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTT
CAAAGTTCCAAGTCTTACCAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACA
AAGTTAATTCAACTGCTGGTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGG
TTGCTTGCAAAGATGGTGATGCCTTTGTTCAATTGCCCAATTCCAAAACTTACTCCCCCG
GATTCTGAAATTGTTAGCCATTTAACAGTTCGTCAAACACATACACCATATGACTATGTT
GTAAATGGAAGTGTTTACTTTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAA
AAAGATGAGACATTCCCAAAGAATATGACTGTTACACAAGATGATAATACATCTTTCATC
TTTAACTTAAACTCTGAAAAATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTA
AATAATAAAATTATGAATTTCAGAAATTAAAAAAAAAAAAAAAAA