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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ247
Library SS
(Link to library)
Clone ID SSJ247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16097-1
Original site URL
Representative seq. ID SSJ247Z
(Link to Original site)
Representative DNA sequence 
>SSJ247 (SSJ247Q) /CSM/SS/SSJ2-B/SSJ247Q.Seq.d/
XXXXXXXXXXTCGGATACTCCAGAGAAATTATACCTTGTTATGGAACTTGTTACAGGTGG
TGAATTATTTGATTAAAATTGTTGAAAAAGGTTCATATTCAGAAGCAGATGCCGCCAATT
TAGTTAAAAAGATTGTTTCAGCTGTTGGATACCTTCCATGGGTTAAATATCGTCCACAGA
GATTTAAAACCAGAAAATTTACTTTTGAATCTAAAGAAAACCATTTGGAAGTTGCTATTG
CTGATTTTGGTCTTAGTAAAATTATTGGCCAAACTCTTGTAATGCAAACTGCCATGTGGT
ACACCAAGTTATGTTGCACCAGAGGTATTGAATGCAACTGGTTATGATAGGGAAGTTGAT
ATGTGGAGTATTGGTGTCATCACTTATATTTTATTATGTGGTTTCCCACCATTCTACGGT
GATACAGTCCCAGAAATCTTTGAACAAATTATGGAAGCCAACTATGAATTCCCAGAAGAA
TATTGGGGTGGTATCTCTAAAGAAGCCAAAGACTTTATTGGAAAATTATTAGTTGTTGAT
GTTAGCAAAAGATTAAATGCTACCAATGCTCTCAATCATCCTTGGTTAAAGTCCAATAAC
TCAAATAACACCATTGATACTGTTAAAATGAAAGAATACATTGTTGAAAGACAAAAAACT
CAAACAAAATTGGTTAACTAAAAGAATATTTCAATAATAATAATA
sequence update 1998. 1. 8
Translated Amino Acid sequence 
---gysreiipcygtcyrw*ii*lkllkkvhiqkqmppi*lkrlfqlldtfhglnivhrd
lkpenlllnlkktiwkllllilvlvkllakll*CKLPCGTPSYVAPEVLNATGYDREVDM
WSIGVITYILLCGFPPFYGDTVPEIFEQIMEANYEFPEEYWGGISKEAKDFIGKLLVVDV
SKRLNATNALNHPWLKSNNSNNTIDTVKMKEYIVERQKTQTKLVN*knisiiii
Translated Amino Acid sequence (All Frames) 
Frame A:
---rilqrnytllwnllqvvnylikivekgsyseadaanlvkkivsavgylpwvkyrpqr
fktrkftfeskenhlevaiadfglskiigqtlvmqtamwytklcctrgiecnwl**gs*y
veywchhlyfimwfptilr*ysprnl*tnygsql*iprrilgwyl*rsqrlywkiisc*c
*qkikcyqcsqsslvkvq*lk*hh*yc*nerihc*ktknsnkig*lkeyfnnnn


Frame B:
---gysreiipcygtcyrw*ii*lkllkkvhiqkqmppi*lkrlfqlldtfhglnivhrd
lkpenlllnlkktiwkllllilvlvkllakll*CKLPCGTPSYVAPEVLNATGYDREVDM
WSIGVITYILLCGFPPFYGDTVPEIFEQIMEANYEFPEEYWGGISKEAKDFIGKLLVVDV
SKRLNATNALNHPWLKSNNSNNTIDTVKMKEYIVERQKTQTKLVN*knisiiii


Frame C:
---dtpeklylvmelvtggelfd*nc*krfifrsrcrqfs*kdcfscwipsmg*isstei
*nqkiyf*i*rkpfgscyc*fws**nywpnscnanchvvhqvmlhqry*mqlvmigklic
gvlvsslifyyvvshhstviqsqkslnklwkptmnsqknigvvslkkpktlleny*llml
akd*mlpmlsiilg*spitqitplillk*kntllkdkklkqnwltkrifq***
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ247 (SSJ247Q) /CSM/SS/SSJ2-B/SSJ247Q.Seq.d/                       1378   0.0
SLE324 (SLE324Q) /CSM/SL/SLE3-A/SLE324Q.Seq.d/                       1275   0.0
VSE849 (VSE849Q) /CSM/VS/VSE8-C/VSE849Q.Seq.d/                       1261   0.0
SSG783 (SSG783Q) /CSM/SS/SSG7-D/SSG783Q.Seq.d/                       1255   0.0
VSE601 (VSE601Q) /CSM/VS/VSE6-A/VSE601Q.Seq.d/                       1100   0.0
SSM378 (SSM378Q) /CSM/SS/SSM3-D/SSM378Q.Seq.d/                       1082   0.0
VSF220 (VSF220Q) /CSM/VS/VSF2-A/VSF220Q.Seq.d/                       1066   0.0
SLI519 (SLI519Q) /CSM/SL/SLI5-A/SLI519Q.Seq.d/                        969   0.0
AFL629 (AFL629Q) /CSM/AF/AFL6-B/AFL629Q.Seq.d/                        946   0.0
VSE625 (VSE625Q) /CSM/VS/VSE6-B/VSE625Q.Seq.d/                        795   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M64176|M64176.1 D.discoideum myosin light chain kinase (MLCK) mRNA, complete cds.   811   0.0    5
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    78   3e-24  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    62   4e-12  6
BG809925|BG809925.1 mgct001xp07f Magnaporthe grisea Appressorium Stage cDNA Magnaporthe grisea cDNA clone mgct001xp07f 5', mRNA sequence.    36   1e-11  5
AZ667950|AZ667950.1 ENTFN88TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   6e-11  4
AB118103|AB118103.1 Entamoeba histolytica gene for hypothetical protein, complete cds, clone:Eh-2109.    48   6e-11  4
BH137166|BH137166.1 ENTNR83TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   3e-10  4
AZ672839|AZ672839.1 ENTIX25TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    48   2e-06  3
BI073912|BI073912.1 kt36f03.y1 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q22068 Q22068 SIMILARITY TO 5'-AMP-ACTIVATED PROTEIN KINASE. [1] ;, mRNA sequence.    44   2e-06  3
CF080619|CF080619.1 QHL10E04.yg.ab1 QH_L sunflower H.paradoxus (salt stress) Helianthus paradoxus cDNA clone QHL10E04, mRNA sequence.    46   8e-06  2
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P25323) RecName: Full=Myosin light chain kinase A;          Sho...   284   4e-82
A40811(A40811;A37125)myosin-light-chain kinase (EC 2.7.1.117) A ...   268   2e-78
AB118103_1(AB118103|pid:none) Entamoeba histolytica gene for hyp...   150   3e-37
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   143   5e-36
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m...   136   9e-35
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...   134   1e-34
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-...   137   2e-34
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...   137   4e-34
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...   137   4e-34
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c...   137   4e-34
protein update 2009. 6.13
PSORT 

 psg: 0.84  gvh: 0.41  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSJ247 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ247Z
3' end seq. 
>SSJ247Z.Seq
----------TCGGATACTCCAGAGAAATTATACCTTGTTATGGAACTTGTTACAGGTGG
TGAATTATTTGATTAAAATTGTTGAAAAAGGTTCATATTCAGAAGCAGATGCCGCCAATT
TAGTTAAAAAGATTGTTTCAGCTGTTGGATACCTTCCATGGGTTAAATATCGTCCACAGA
GATTTAAAACCAGAAAATTTACTTTTGAATCTAAAGAAAACCATTTGGAAGTTGCTATTG
CTGATTTTGGTCTTAGTAAAATTATTGGCCAAACTCTTGTAATGCAAACTGCCATGTGGT
ACACCAAGTTATGTTGCACCAGAGGTATTGAATGCAACTGGTTATGATAGGGAAGTTGAT
ATGTGGAGTATTGGTGTCATCACTTATATTTTATTATGTGGTTTCCCACCATTCTACGGT
GATACAGTCCCAGAAATCTTTGAACAAATTATGGAAGCCAACTATGAATTCCCAGAAGAA
TATTGGGGTGGTATCTCTAAAGAAGCCAAAGACTTTATTGGAAAATTATTAGTTGTTGAT
GTTAGCAAAAGATTAAATGCTACCAATGCTCTCAATCATCCTTGGTTAAAGTCCAATAAC
TCAAATAACACCATTGATACTGTTAAAATGAAAGAATACATTGTTGAAAGACAAAAAACT
CAAACAAAATTGGTTAACTAAAAGAATATTTCAATAATAATAATA
Length of 3' end seq. 695
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -