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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ246
Library SS
(Link to library)
Clone ID SSJ246
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16352-1
Original site URL
Representative seq. ID SSJ246P
(Link to Original site)
Representative DNA sequence 
>SSJ246 (SSJ246Q) /CSM/SS/SSJ2-B/SSJ246Q.Seq.d/
AAATTATAAAATGTTATTCAAATCATTACAATCAATCACAAGTGTTAACTCAATCCAAAA
GAATCAAATTTCTTCAATTTCAGTAGGAAGCACACAATCAAATAATAATGCAGCACTCTT
AGATGCTGCAGCACTTGTTGTAATTCCAGGTTTATTGACTGCTGCCGCTGTTGCTCATAT
TTAAATCTTCAAAGAATCCTGAATTAACTAATAATTCATATATTAATCCCATGGGAAATA
TTTGAAAATTTAATTGTATATTTAATAAATAATTAATTATATTTATTAATTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXATCCCC
AATCACTTTACAATCGTGGTCACCCCGCGCATACTCCGTCCATACAGTCCCCAGATTTCT
TCGATCCCAGTGGGGAGCCCCCCTTCAAATACNAATGCGGCCCTCTTAGATGCNGCAGAC
ACTTGTTGTAATTCCAGGTTTATTGACTGCTGCCCGCTGTTGCTCATATTTAAATCTTCA
AAGAANCCTGAATTAACTAATAATTCATATATTAATCCCATGGGAAATATTTGAAAATTT
AATTGTATATTTAATAAATAATTAATTATATTTATTCATTTTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1998.12.21
Translated Amino Acid sequence 
kl*nviqiitinhkc*lnpkesnffnfsrkhtik**cstlrccstccnsrfidccrccsy
lnlqriln*liihilipweifenlivylinn*LYLLIFKKKKKKKKKKKKKKKK---

---IPNHFTIVVTPRILRPYSPQISSIPVGSPPSNTNAALLDAADTCCNSRFIDCCPLLL
IFKSSKXPELTNNSYINPMGNI*kfncifnk*liifihf*kkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kl*nviqiitinhkc*lnpkesnffnfsrkhtik**cstlrccstccnsrfidccrccsy
lnlqriln*liihilipweifenlivylinn*LYLLIFKKKKKKKKKKKKKKKK---

---IPNHFTIVVTPRILRPYSPQISSIPVGSPPSNTNAALLDAADTCCNSRFIDCCPLLL
IFKSSKXPELTNNSYINPMGNI*kfncifnk*liifihf*kkkkkkkkkkkkkkkk

Frame B:
nykmlfkslqsitsvnsiqknqissisvgstqsnnnaalldaaalvvipglltaaavahi
*ifkes*in**fiy*shgkylki*lyi**iinyiy*flkkkkkkkkkkkkkkkk---

---spitlqswspraysvhtvprflrsqwgaplqixmrps*mxqtlvvipglltaarccs
ylnlqrxln*liihilipweifenlivylinn*lylfifkkkkkkkkkkkkkkkkk

Frame C:
iikcysnhynqsqvltqskrikflqfq*eahnqiimqhs*mlqhll*fqvy*llplllif
kssknpeltnnsyinpmgni*kfncifnk*liifinf*kkkkkkkkkkkkkkkk---

---pqslynrghpahtpsiqspdffdpsgeppfkyxcgplrcxrhll*fqvy*llpavah
i*ifkex*in**fiy*shgkylki*lyi**iinyiysflkkkkkkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ246 (SSJ246Q) /CSM/SS/SSJ2-B/SSJ246Q.Seq.d/                        555   e-157
SSM440 (SSM440Q) /CSM/SS/SSM4-B/SSM440Q.Seq.d/                        464   e-130
SSJ512 (SSJ512Q) /CSM/SS/SSJ5-A/SSJ512Q.Seq.d/                        464   e-130
SSJ494 (SSJ494Q) /CSM/SS/SSJ4-D/SSJ494Q.Seq.d/                        464   e-130
SSG250 (SSG250Q) /CSM/SS/SSG2-C/SSG250Q.Seq.d/                        464   e-130
SSC275 (SSC275Q) /CSM/SS/SSC2-D/SSC275Q.Seq.d/                        412   e-114
SSL349 (SSL349Q) /CSM/SS/SSL3-C/SSL349Q.Seq.d/                        329   3e-89
SSI685 (SSI685Q) /CSM/SS/SSI6-D/SSI685Q.Seq.d/                        329   3e-89
SSC882 (SSC882Q) /CSM/SS/SSC8-D/SSC882Q.Seq.d/                        329   3e-89
SSA848 (SSA848Q) /CSM/SS/SSA8-B/SSA848Q.Seq.d/                        327   1e-88
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC068907|AC068907.36 Mus musculus clone rp23-347f7 map 13 strain C57BL/6J, WORKING DRAFT SEQUENCE, 15 unordered pieces.    52  0.009  1
AC131582|AC131582.4 Mus musculus clone RP23-116N15, WORKING DRAFT SEQUENCE, 10 unordered pieces.    52  0.009  1
AE014851|AE014851.1 Plasmodium falciparum 3D7 chromosome 12 section 8 of 9 of the complete sequence.    34  0.012  12
BP191281|BP191281.1 Dugesia japonica cDNA, clone: 06989_HH, expressed in the head.    40  0.024  3
BX323842|BX323842.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  CH211-1M7.    44  0.034  2
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    44  0.035  6
BX572087|BX572087.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    44  0.036  2
AC016772|AC016772.9 Homo sapiens BAC clone RP11-567N19 from 2, complete sequence.    42  0.16  4
AC124761|AC124761.4 Mus musculus chromosome 6 clone RP23-142G18, complete sequence.    38  0.17  4
AE014838|AE014838.1 Plasmodium falciparum 3D7 chromosome 11 section 3 of 8 of the complete sequence.    42  0.20  8
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54M59) RecName: Full=Uncharacterized transmembrane protein DDB...    47   7e-04
(Q54R31) RecName: Full=Uncharacterized transmembrane protein DDB...    41   0.030
protein update 2009. 2. 1
PSORT 

 psg: 0.03  gvh: 0.42  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.46  mip: 0.06
 nuc: 0.79  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: cytoplasmic

>> prediction for SSJ246 is nuc
5' end seq. ID SSJ246F
5' end seq. 
>SSJ246F.Seq
AAATTATAAAATGTTATTCAAATCATTACAATCAATCACAAGTGTTAACTCAATCCAAAA
GAATCAAATTTCTTCAATTTCAGTAGGAAGCACACAATCAAATAATAATGCAGCACTCTT
AGATGCTGCAGCACTTGTTGTAATTCCAGGTTTATTGACTGCTGCCGCTGTTGCTCATAT
TTAAATCTTCAAAGAATCCTGAATTAACTAATAATTCATATATTAATCCCATGGGAAATA
TTTGAAAATTTAATTGTATATTTAATAAATAATTAATTATATTTATTAATTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 5' end seq. 344
3' end seq. ID SSJ246Z
3' end seq. 
>SSJ246Z.Seq
----------ATCCCCAATCACTTTACAATCGTGGTCACCCCGCGCATACTCCGTCCATA
CAGTCCCCAGATTTCTTCGATCCCAGTGGGGAGCCCCCCTTCAAATACNAATGCGGCCCT
CTTAGATGCNGCAGACACTTGTTGTAATTCCAGGTTTATTGACTGCTGCCCGCTGTTGCT
CATATTTAAATCTTCAAAGAANCCTGAATTAACTAATAATTCATATATTAATCCCATGGG
AAATATTTGAAAATTTAATTGTATATTTAATAAATAATTAATTATATTTATTCATTTTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 340
Connected seq. ID SSJ246P
Connected seq. 
>SSJ246P.Seq
AAATTATAAAATGTTATTCAAATCATTACAATCAATCACAAGTGTTAACTCAATCCAAAA
GAATCAAATTTCTTCAATTTCAGTAGGAAGCACACAATCAAATAATAATGCAGCACTCTT
AGATGCTGCAGCACTTGTTGTAATTCCAGGTTTATTGACTGCTGCCGCTGTTGCTCATAT
TTAAATCTTCAAAGAATCCTGAATTAACTAATAATTCATATATTAATCCCATGGGAAATA
TTTGAAAATTTAATTGTATATTTAATAAATAATTAATTATATTTATTAATTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------ATCCCC
AATCACTTTACAATCGTGGTCACCCCGCGCATACTCCGTCCATACAGTCCCCAGATTTCT
TCGATCCCAGTGGGGAGCCCCCCTTCAAATACNAATGCGGCCCTCTTAGATGCNGCAGAC
ACTTGTTGTAATTCCAGGTTTATTGACTGCTGCCCGCTGTTGCTCATATTTAAATCTTCA
AAGAANCCTGAATTAACTAATAATTCATATATTAATCCCATGGGAAATATTTGAAAATTT
AATTGTATATTTAATAAATAATTAATTATATTTATTCATTTTTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 684
Full length Seq ID -
Full length Seq. -
Length of full length seq. -