>SSJ239 (SSJ239Q) /CSM/SS/SSJ2-B/SSJ239Q.Seq.d/
GTGTTATTCAATTGTTCGCAATCTTAAAATTACAAAATGGATTGTGCAATTCCCAAAAGA
TGTAGAGGATATGTTAAGAACATTTGATTCAAATGGTGATGGTAATATTACATTTGATGA
AGCTGTAAAACGTTTGAAGGAACCCGGTTCAAAGATCCATTACGTGCTGCCTCTTCATGT
TTATTTCTCTTGATAGGGATCAGGATGGAATTATTTCAATAAAGGAGATTCATGGCCATA
AGGCTGATGTTGCTGCAAGGAAATTGCAAAGGGCAATTAACAACATCTGTAACAACTTCT
TGAAGGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGG
TAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTG
AATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTA
AATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATC
AACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCT
TTTAAAAATAAA

viqlfailklqnglcnsqkm*ric*ehliqmvmvilhlmkl*nv*RNPVQRSITCCLFMF
ISLDRDQDGIISIKEIHGHKADVAARKLQRAINNICNNFLKGYDTDKDGRISWDEVCNWV
NKNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinq
hl*fsflkkfk*ink*kiif*k*

Frame A:
vlfncsqs*nykmdcaipkrcrgyvkni*fkw*w*yyi**scktfegtrfkdplraassc
lflligirmelfq*rrfmairlmllqgnckgqlttsvtts*ramtlirmegshgmkyaig
*iktiqmqllhl*llkislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lli
niynfhf*knlnk*inkk*sfknk


Frame B:
cysivrnlkitkwivqfpkdvedmlrtfdsngdgnitfdeavkrlkepgskihyvlplhv
yfs**gsgwnyfnkgdswp*g*ccckeiakgn*qhl*qllegl*h**gwkdlmg*smqlg
k*kqsrcncstydc*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*s
tfiififkki*ink*iknnllki


Frame C:
viqlfailklqnglcnsqkm*ric*ehliqmvmvilhlmkl*nv*RNPVQRSITCCLFMF
ISLDRDQDGIISIKEIHGHKADVAARKLQRAINNICNNFLKGYDTDKDGRISWDEVCNWV
NKNNPDAIAPLMIVENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinq
hl*fsflkkfk*ink*kiif*k*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ239 (SSJ239Q) /CSM/SS/SSJ2-B/SSJ239Q.Seq.d/                       1104   0.0
SSK126 (SSK126Q) /CSM/SS/SSK1-B/SSK126Q.Seq.d/                        944   0.0
SSI779 (SSI779Q) /CSM/SS/SSI7-D/SSI779Q.Seq.d/                        944   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        936   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        936   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                        936   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                        936   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                        936   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                        936   0.0
SSJ884 (SSJ884Q) /CSM/SS/SSJ8-D/SSJ884Q.Seq.d/                        936   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.    708   0.0    4
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   708   0.0    3
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    30   0.052  16
AC004709|AC004709.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 3 unordered pieces.    36   0.058  8
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    36   0.073  9
AL354807|AL354807.6 Human DNA sequence from clone RP11-522F22 on chromosome 13.    42   0.12   5
AC122289|AC122289.2 Mus musculus BAC clone RP23-254F12 from 3, complete sequence.    36   0.18   6
AC025427|AC025427.11 Homo sapiens chromosome 10 clone RP11-29J13, complete sequence.    36   0.33   6
AC142028|AC142028.1 Rattus norvegicus clone CH230-332B21, *** SEQUENCING IN PROGRESS ***, 46 unordered pieces.    40   0.34   3
AC118481|AC118481.9 Rattus norvegicus clone CH230-10J17, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    36   0.36   8

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    42   1e-06
BC074397_1(BC074397|pid:none) Xenopus laevis MGC84373 protein, m...    35   1e-04
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    49   1e-04
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     49   1e-04
AL844509_371(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    42   4e-04
AM910994_159(AM910994|pid:none) Plasmodium knowlesi strain H chr...    42   4e-04
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    37   4e-04
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    37   4e-04
EU868624_1(EU868624|pid:none) Synthetic construct calcium indica...    33   8e-04
BC135179_1(BC135179|pid:none) Xenopus tropicalis hypothetical pr...    33   0.001

 psg: 0.98  gvh: 0.40  alm: 0.44  top: 0.23  tms: 0.00  mit: 0.49  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 20.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for SSJ239 is cyt

>SSJ239E.Seq
GTGTTATTCAATTGTTCGCAATCTTAAAATTACAAAATGGATTGTGCAATTCCCAAAAGA
TGTAGAGGATATGTTAAGAACATTTGATTCAAATGGTGATGGTAATATTACATTTGATGA
AGCTGTAAAACGTTTGAAGGAACCCGGTTCAAAGATCCATTACGTGCTGCCTCTTCATGT
TTATTTCTCTTGATAGGGATCAGGATGGAATTATTTCAATAAAGGAGATTCATGGCCATA
AGGCTGATGTTGCTGCAAGGAAATTGCAAAGGGCAATTAACAACATCTGTAACAACTTCT
TGAAGGGCTATGACACTGATAAGGATGGAAGGATCTCATGGGATGAAGTATGCAATTGGG
TAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATTGTTGAAAATTTCTTTAGTG
AATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAACTTCAGGAGTACGTTACTA
AATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCAAATTCAATAATTATTAATC
AACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATAAATAAATAAAAAATAATCT
TTTAAAAATAAA