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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ235
Library SS
(Link to library)
Clone ID SSJ235
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U00438-1
Original site URL
Representative seq. ID SSJ235P
(Link to Original site)
Representative DNA sequence 
>SSJ235 (SSJ235Q) /CSM/SS/SSJ2-B/SSJ235Q.Seq.d/
CAGATCCAAGATTACCAAGTGGATGGGTAATTAGACAAGATCAAAGTGGTAAACAATATT
ATGTTGATCACAACACAAAGAGTGCTCATTGGACTTTACCACCACATATTGCTGTATTAT
TAAATCAACCATCAACTTCAAATGCTACTACACCACTTCAACCAATGAAACCAATTCAAC
AACAAGGATATGTCTATCCACAACAACAACAACAACAACAACAAGCAGTAGCTGGATATC
CAGGTGCTGTTCAATATGGTAGCTATCCTCAACCACAACAAGGTTATGTATACCCACAAT
ACTATCAACAATATCCAACTTCTACTTATATGATGTCTTATCCTTCTTCAAGTTGCCACA
GTCGTCATCATCATTGCTAAATAGCAGTTTATAAAAAAAAAAAAAATCATAATAAATTTT
TTAAAAAAACACAACAAACCTAAATGTGGTAAAAAACTGAAATTTTATTTTGTAAAAAAT
TAGCATTTTACAACATTTGGAATTTGCCATCTTTTTAAAAAAAAAAAAAAAAGTTTTAAA
AATAATATCTTGCCAAGAAAAATAAXXXXXXXXXXCCCAAAGGCTGGGNTCCGGGCCCCC
CCCCGGGGNCGGCCCCACGGGCCCGCCGGTCCCAGGTTTCCCCAGGGGGTGGGGTATTNG
GCCAGGNCCAAGGGGGTAAACCATTATTATGGTGGTCCCCACCCCAAGGGGGGCCCCATG
GGCCTTTCCCCCCCCTTATTGGCGGTTTTTTTAAATTCACCCTTCACCTTCAAATGCTCC
TACCCCACTTCACCCATGGACCCATTTCCACCACCGGGGTTATGTCTATCCCACAACACC
AACAACAACAACAACAGGCAGTAGCTGGATATCCAGGTGCTGTNCAATATGGTGGCTATC
CTCACCCACAACAGGGTTATGTATCCCCACATACTATCAACAATATCCAACTTCTACTTA
TATGATGTCTTATCCTTCTTCAAGTTGCCACAGTCGTCATCATCATTGCTAAATAGCGGT
TTATAGTAAAAAAAAAAAATCATAATAAATTTTTTAAAAAAACACAACAAACCTAAATGT
GGTAAAAAACTGAAATTTTATTTTGTAAAAAATTAGCATTTTACAACATTTGGAATTTGC
CATCTTTTTAAAAAAAAAAAAAAAAGTTTTAAAAATAATATCTTGCAAAGAAAAATAAAT
AAAAATAATGTAAATAATACTTTTTTTCAAACGAAAAAAA
sequence update 1998.12.21
Translated Amino Acid sequence 
qiqdyqvdg*ldkikvvnnimlittqrvliglyhhillyy*inhqlqmllhhfnq*nqfn
nkdmsihnnnnnnnkq*ldiqvlfnmvailnhnkvmythntinniqllli*clillqvat
vviiiak*qfikkkkiiinflkkhnkpkcgkklkfyfvkn*HFTTFGICHLFKKKKKSFK
NNILPRKI---

---PKGWXPGPPPGXAPRARRSQVSPGGGVXGQXQGGKPLLWWSPPQGGPHGPFPPLIGG
FFKFTLHLQMLLPHFTHGPISTTGVMSIPQHQQQQQQAVAGYPGAVQYGGYPHPQQGYVS
PHTINNIQLLLI*clillqvatvviiiak*rfivkkknhnkffkktqqt*mw*kteilfc
kklafyniwnlpsf*kkkkkf*k*ylakknk*k*ck*yffsnek
Translated Amino Acid sequence (All Frames) 
Frame A:
qiqdyqvdg*ldkikvvnnimlittqrvliglyhhillyy*inhqlqmllhhfnq*nqfn
nkdmsihnnnnnnnkq*ldiqvlfnmvailnhnkvmythntinniqllli*clillqvat
vviiiak*qfikkkkiiinflkkhnkpkcgkklkfyfvkn*HFTTFGICHLFKKKKKSFK
NNILPRKI---

---PKGWXPGPPPGXAPRARRSQVSPGGGVXGQXQGGKPLLWWSPPQGGPHGPFPPLIGG
FFKFTLHLQMLLPHFTHGPISTTGVMSIPQHQQQQQQAVAGYPGAVQYGGYPHPQQGYVS
PHTINNIQLLLI*clillqvatvviiiak*rfivkkknhnkffkktqqt*mw*kteilfc
kklafyniwnlpsf*kkkkkf*k*ylakknk*k*ck*yffsnek

Frame B:
rskitkwmgn*trskw*tilc*sqhkecsldftttycciikstinfkcyyttstnetnst
triclsttttttttssswisrccsiw*lsstttrlciptilstisnfylydvlsffklpq
ssssllnssl*kkkks**if*knttnlnvvkn*nfil*kisilqhlefaiflkkkkkvlk
iiscqek*---

---pkagxrapprgrphgpagprfpqgvgyxarxkgvnhyyggphpkggpmglsppllav
flnspftfkcsyptspmdpfpppglclshntnnnnnrq*ldiqvlxnmvailthnrvmyp
hilstisnfylydvlsffklpqssssllnsgl**kkkiiinflkkhnkpkcgkklkfyfv
kn*hfttfgichlfkkkkksfknnilqrkinknnvnntffqtkk

Frame C:
dprlpsgwvirqdqsgkqyyvdhntksahwtlpphiavllnqpstsnattplqpmkpiqq
qgyvypqqqqqqqqavagypgavqygsypqpqqgyvypqyyqqyptstymmsypssschs
rhhhc*iavykkkknhnkffkktqqt*mw*kteilfckklafyniwnlpsf*kkkkkf*k
*ylakkn---

---qrlgsgpppgxgptgppvpgfprgwgixpgprg*tiimvvptprgapwafpppywrf
f*ihpspsnaptplhpwthfhhrgyvypttptttttgsswisrccxiwwlsspttglcip
tyyqqyptstymmsypssschsrhhhc*iavyskkkks**if*knttnlnvvkn*nfil*
kisilqhlefaiflkkkkkvlkiisckek*ikim*iilffkrkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ235 (SSJ235Q) /CSM/SS/SSJ2-B/SSJ235Q.Seq.d/                        462   e-129
SFC403 (SFC403Q) /CSM/SF/SFC4-A/SFC403Q.Seq.d/                        394   e-108
AFI624 (AFI624Q) /CSM/AF/AFI6-A/AFI624Q.Seq.d/                        394   e-108
VSJ819 (VSJ819Q) /CSM/VS/VSJ8-A/VSJ819Q.Seq.d/                        357   3e-97
SSH690 (SSH690Q) /CSM/SS/SSH6-D/SSH690Q.Seq.d/                        333   4e-90
SLD889 (SLD889Q) /CSM/SL/SLD8-D/SLD889Q.Seq.d/                         40   0.079
VFM448 (VFM448Q) /CSM/VF/VFM4-B/VFM448Q.Seq.d/                         38   0.31
VFH207 (VFH207Q) /CSM/VF/VFH2-A/VFH207Q.Seq.d/                         38   0.31
SHF403 (SHF403Q) /CSM/SH/SHF4-A/SHF403Q.Seq.d/                         38   0.31
SHB404 (SHB404Q) /CSM/SH/SHB4-A/SHB404Q.Seq.d/                         38   0.31
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BF004263|BF004263.1 EST432761 KV1 Medicago truncatula cDNA clone pKV1-17I9, mRNAsequence.    56   0.001  1
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    38   0.002  13
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34   0.005  19
AF003142|AF003142.1 Caenorhabditis elegans cosmid F57C9.    44   0.012  4
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2.    30   0.053  15
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    32   0.063  11
AF083031|AF083031.2 Guillardia theta nucleomorph chromosome 3, complete sequence.    36   0.072  7
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.15   12
AC011669|AC011669.10 Homo sapiens chromosome 11, clone RP11-145B21, complete sequence.    38   0.18   8
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    38   0.22   11
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM494964_14(AM494964|pid:none) Leishmania braziliensis chromosom...    54   1e-05
CP000079_13(CP000079|pid:none) Leishmania major strain Friedlin ...    52   4e-05
AY333788_1(AY333788|pid:none) Trypanosoma cruzi CCCH zinc-finger...    51   1e-04
AF229024_1(AF229024|pid:none) Oryctolagus cuniculus ubiquitin-pr...    50   2e-04
AC159425_43(AC159425|pid:none) Trypanosoma brucei chromosome 3 c...    49   4e-04
EF173367_6(EF173367|pid:none) Aedes aegypti clone BAC 124C17, co...    49   5e-04
AM270158_8(AM270158|pid:none) Aspergillus niger contig An08c0030...    48   8e-04
BX908812_22(BX908812|pid:none) Neurospora crassa DNA linkage gro...    47   0.001
EU188915_1(EU188915|pid:none) Trypanosoma cruzi clone Dm28c CCCH...    47   0.002
AC024847_5(AC024847|pid:none) Caenorhabditis elegans cosmid Y65B...    46   0.002
protein update 2009. 6.13
PSORT 

 psg: 0.90  gvh: 0.39  alm: 0.42  top: 0.87  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.20  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSJ235 is nuc
5' end seq. ID SSJ235F
5' end seq. 
>SSJ235F.Seq
CAGATCCAAGATTACCAAGTGGATGGGTAATTAGACAAGATCAAAGTGGTAAACAATATT
ATGTTGATCACAACACAAAGAGTGCTCATTGGACTTTACCACCACATATTGCTGTATTAT
TAAATCAACCATCAACTTCAAATGCTACTACACCACTTCAACCAATGAAACCAATTCAAC
AACAAGGATATGTCTATCCACAACAACAACAACAACAACAACAAGCAGTAGCTGGATATC
CAGGTGCTGTTCAATATGGTAGCTATCCTCAACCACAACAAGGTTATGTATACCCACAAT
ACTATCAACAATATCCAACTTCTACTTATATGATGTCTTATCCTTCTTCAAGTTGCCACA
GTCGTCATCATCATTGCTAAATAGCAGTTTATAAAAAAAAAAAAAATCATAATAAATTTT
TTAAAAAAACACAACAAACCTAAATGTGGTAAAAAACTGAAATTTTATTTTGTAAAAAAT
TAGCATTTTACAACATTTGGAATTTGCCATCTTTTTAAAAAAAAAAAAAAAAGTTTTAAA
AATAATATCTTGCCAAGAAAAATAA----------
Length of 5' end seq. 565
3' end seq. ID SSJ235Z
3' end seq. 
>SSJ235Z.Seq
----------CCCAAAGGCTGGGNTCCGGGCCCCCCCCCGGGGNCGGCCCCACGGGCCCG
CCGGTCCCAGGTTTCCCCAGGGGGTGGGGTATTNGGCCAGGNCCAAGGGGGTAAACCATT
ATTATGGTGGTCCCCACCCCAAGGGGGGCCCCATGGGCCTTTCCCCCCCCTTATTGGCGG
TTTTTTTAAATTCACCCTTCACCTTCAAATGCTCCTACCCCACTTCACCCATGGACCCAT
TTCCACCACCGGGGTTATGTCTATCCCACAACACCAACAACAACAACAACAGGCAGTAGC
TGGATATCCAGGTGCTGTNCAATATGGTGGCTATCCTCACCCACAACAGGGTTATGTATC
CCCACATACTATCAACAATATCCAACTTCTACTTATATGATGTCTTATCCTTCTTCAAGT
TGCCACAGTCGTCATCATCATTGCTAAATAGCGGTTTATAGTAAAAAAAAAAAATCATAA
TAAATTTTTTAAAAAAACACAACAAACCTAAATGTGGTAAAAAACTGAAATTTTATTTTG
TAAAAAATTAGCATTTTACAACATTTGGAATTTGCCATCTTTTTAAAAAAAAAAAAAAAA
GTTTTAAAAATAATATCTTGCAAAGAAAAATAAATAAAAATAATGTAAATAATACTTTTT
TTCAAACGAAAAAAA
Length of 3' end seq. 665
Connected seq. ID SSJ235P
Connected seq. 
>SSJ235P.Seq
CAGATCCAAGATTACCAAGTGGATGGGTAATTAGACAAGATCAAAGTGGTAAACAATATT
ATGTTGATCACAACACAAAGAGTGCTCATTGGACTTTACCACCACATATTGCTGTATTAT
TAAATCAACCATCAACTTCAAATGCTACTACACCACTTCAACCAATGAAACCAATTCAAC
AACAAGGATATGTCTATCCACAACAACAACAACAACAACAACAAGCAGTAGCTGGATATC
CAGGTGCTGTTCAATATGGTAGCTATCCTCAACCACAACAAGGTTATGTATACCCACAAT
ACTATCAACAATATCCAACTTCTACTTATATGATGTCTTATCCTTCTTCAAGTTGCCACA
GTCGTCATCATCATTGCTAAATAGCAGTTTATAAAAAAAAAAAAAATCATAATAAATTTT
TTAAAAAAACACAACAAACCTAAATGTGGTAAAAAACTGAAATTTTATTTTGTAAAAAAT
TAGCATTTTACAACATTTGGAATTTGCCATCTTTTTAAAAAAAAAAAAAAAAGTTTTAAA
AATAATATCTTGCCAAGAAAAATAA----------CCCAAAGGCTGGGNTCCGGGCCCCC
CCCCGGGGNCGGCCCCACGGGCCCGCCGGTCCCAGGTTTCCCCAGGGGGTGGGGTATTNG
GCCAGGNCCAAGGGGGTAAACCATTATTATGGTGGTCCCCACCCCAAGGGGGGCCCCATG
GGCCTTTCCCCCCCCTTATTGGCGGTTTTTTTAAATTCACCCTTCACCTTCAAATGCTCC
TACCCCACTTCACCCATGGACCCATTTCCACCACCGGGGTTATGTCTATCCCACAACACC
AACAACAACAACAACAGGCAGTAGCTGGATATCCAGGTGCTGTNCAATATGGTGGCTATC
CTCACCCACAACAGGGTTATGTATCCCCACATACTATCAACAATATCCAACTTCTACTTA
TATGATGTCTTATCCTTCTTCAAGTTGCCACAGTCGTCATCATCATTGCTAAATAGCGGT
TTATAGTAAAAAAAAAAAATCATAATAAATTTTTTAAAAAAACACAACAAACCTAAATGT
GGTAAAAAACTGAAATTTTATTTTGTAAAAAATTAGCATTTTACAACATTTGGAATTTGC
CATCTTTTTAAAAAAAAAAAAAAAAGTTTTAAAAATAATATCTTGCAAAGAAAAATAAAT
AAAAATAATGTAAATAATACTTTTTTTCAAACGAAAAAAA
Length of connected seq. 1230
Full length Seq ID -
Full length Seq. -
Length of full length seq. -