NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSJ233
Library SS
(Link to library)
Clone ID SSJ233
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16465-1
Original site URL
Representative seq. ID SSJ233P
(Link to Original site)
Representative DNA sequence 
>SSJ233 (SSJ233Q) /CSM/SS/SSJ2-B/SSJ233Q.Seq.d/
GATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAA
TCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATA
CTATGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATT
AGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAA
GATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGA
TCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAA
TATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGC
TGAATCTGCCGATACCTATCTTCACAGAGTAGGTCGTGCTGGTCGTTTTGGTACCAAGGG
TTTAGCCATTTCTTTTGTTCCTTCAAAAGAAGATCCAGTACTTGAACAAGTTCAATCTAA
ATTTGTTGTTTCAATTAAAGAACTTGTTGCAACCCCAGATCCAAGTACTTATATGTCTGG
TTAAAAAAAAAAAAAAAAAAAAAAAAAAXXXXXXXXXXCCCNCACCTCCGATTTGGGGGA
ATCTGCCGGTCCCTTTTTTCCCGGGGTTGGTCNTGCTGGCCGTTTTGGTCCCGGGGGTTT
CGCCATTTCTTTTGNCCCCTCAAAGGGGGNCCCCGTTCTTGGACAGGTTCCATCTAAATT
TGTTGTTTCAATTTAGGGACTTGTTGCACCCCCCGGTCCCGGTTCTTTTTTGGCTGGTTT
AAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTGTTTTTAAATCCCTTAAAAAAAAATTA
AAAAAAAAATTAATAAATTTCAAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAA
sequence update 1998.12.21
Translated Amino Acid sequence 
cfqlpslipfvqsvrsl*tihwkstsmmvvnslsmvfnntmyqslknkriknslnswih*
tlikplfssnlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlpli
slvvvsilnvsmsssttiwlnlpipifte*vvlvvlvprv*PFLLFLQKKIQYLNKFNLN
LLFQLKNLLQPQIQVLICLVKKKKKKKK---

---PXPPIWGNLPVPFFPGLVXLAVLVPGVSPFLLXPQRGXPFLDRFHLNLLFQFRDLLH
PPVPVLFWLV*kkkkkkknpfcf*ip*kkikkkinkfqv*kkkkkkkkkkkkkkkkknk
Translated Amino Acid sequence (All Frames) 
Frame A:
dvfsypl*yhssnl*evyeqsignlhq*w**thspwsstilctnh*rtke*kth*tlgfi
rl*ssryfrqic*tc*clk*dpprywfpihlyss*prskgsyrtip*iqkl*isyhgch*
ylwswyry*tcqcrhqlryg*icrylssqsrscwsfwyqgfshffcsfkrrsst*tssi*
iccfn*rtccnprskylyvwlkkkkkkkk---

---PXPPIWGNLPVPFFPGLVXLAVLVPGVSPFLLXPQRGXPFLDRFHLNLLFQFRDLLH
PPVPVLFWLV*kkkkkkknpfcf*ip*kkikkkinkfqv*kkkkkkkkkkkkkkkkknk

Frame B:
mfsatlsdtirpickkfmnnpleiyindgskltlhglqqyyvpiteeqknkklielldsl
dfnqavifvksvrradalnkilqdigfpsicihrdldqkdrieqyrkfknfesrimvatn
ifgrgidiervnvvinydmaesadtylhrvgragrfgtkglaisfvpskedpvleqvqsk
fvvsikelvatpdpstymsg*kkkkkkkk---

---phlrfggicrslfsrgwscwpfwsrgfrhffxplkggprswtgsi*iccfnlgtcct
prsrfffgwfkkkkkkkktlfvfkslkkklkkklinfkfkkkkkkkkkkkkkkkkkkt

Frame C:
cfqlpslipfvqsvrsl*tihwkstsmmvvnslsmvfnntmyqslknkriknslnswih*
tlikplfssnlldvlmp*irsskilvshpsvfivtsikrivsnntvnsktlnlvswlpli
slvvvsilnvsmsssttiwlnlpipifte*vvlvvlvprv*PFLLFLQKKIQYLNKFNLN
LLFQLKNLLQPQIQVLICLVKKKKKKKK---

---xtsdlgesagpffpgvgxagrfgpggfaisfxpskgxpvlgqvpskfvvsi*glvap
pgpgsflaglkkkkkkkkpflflnplkkn*kkn**isslkkkkkkkkkkkkkkkkkkq
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ233 (SSJ233Q) /CSM/SS/SSJ2-B/SSJ233Q.Seq.d/                       1193   0.0
SLH648 (SLH648Q) /CSM/SL/SLH6-B/SLH648Q.Seq.d/                       1185   0.0
FC-AI06 (FC-AI06Q) /CSM/FC/FC-AI/FC-AI06Q.Seq.d/                     1185   0.0
AFL695 (AFL695Q) /CSM/AF/AFL6-D/AFL695Q.Seq.d/                       1154   0.0
SLE767 (SLE767Q) /CSM/SL/SLE7-C/SLE767Q.Seq.d/                       1124   0.0
VFA314 (VFA314Q) /CSM/VF/VFA3-A/VFA314Q.Seq.d/                       1031   0.0
AFE253 (AFE253Q) /CSM/AF/AFE2-C/AFE253Q.Seq.d/                       1025   0.0
AFJ724 (AFJ724Q) /CSM/AF/AFJ7-A/AFJ724Q.Seq.d/                        999   0.0
VFE359 (VFE359Q) /CSM/VF/VFE3-C/VFE359Q.Seq.d/                        993   0.0
AFJ621 (AFJ621Q) /CSM/AF/AFJ6-A/AFJ621Q.Seq.d/                        981   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AW724145|AW724145.1 f4b06nm.f2 Neurospora crassa morning cDNA library Neurospora crassacDNA clone f4b06nm 5', mRNA sequence.    58   3e-14  2
AW724144|AW724144.1 f4b06nm.f1 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone f4b06nm 5', mRNA sequence.    58   3e-14  2
AW715373|AW715373.1 g4b02nm.f1 Neurospora crassa morning cDNA library Neurospora crassa cDNA clone g4b02nm 5', mRNA sequence.    58   3e-14  2
CD116259|CD116259.1 ME1-0038P-A145-H11-U.B ME1-0038 Schistosoma mansoni cDNA clone ME1-0038P-A145-H11.B, mRNA sequence.    78   3e-10  1
BF936994|BF936994.1 EST460049 Schistosoma mansoni female, Phil LoVerde/Joe Merrick Schistosoma mansoni cDNA clone SMFCE26 5' end, mRNA sequence.    78   3e-10  1
CD145566|CD145566.1 MG1-0105U-A350-B05-U.B MG1-0105 Schistosoma mansoni cDNA clone MG1-0105U-A350-B05.B, mRNA sequence.    78   3e-10  1
AC133927|AC133927.1 Magnaporthe grisea chromosome 7 clone 22L24, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.    54   1e-09  2
AQ162438|AQ162438.1 mgxb0013A03r CUGI Rice Blast BAC Library Magnaporthe grisea genomic clone mgxb0013A03r, genomic survey sequence.    54   1e-09  2
AQ162555|AQ162555.1 mgxb0013O10r CUGI Rice Blast BAC Library Magnaporthe grisea genomic clone mgxb0013O10r, genomic survey sequence.    54   1e-09  2
AQ362067|AQ362067.1 mgxb0004A10f CUGI Rice Blast BAC Library Magnaporthe grisea genomic clone mgxb0004A10f, genomic survey sequence.    54   1e-09  2
dna update 2004. 2.15
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992691_22(FM992691|pid:none) Candida dubliniensis CD36 chromos...   266   6e-70
(O13792) RecName: Full=ATP-dependent RNA helicase uap56;        ...   263   9e-69
D89270_1(D89270|pid:none) Schizosaccharomyces pombe mRNA, partia...   263   9e-69
AJ010466_1(AJ010466|pid:none) Arabidopsis thaliana mRNA for DEAD...   262   2e-68
GM694469_1(GM694469|pid:none) Sequence 25 from Patent EP1953235.      261   3e-68
GM694505_1(GM694505|pid:none) Sequence 61 from Patent EP1953235....   260   4e-68
BT068295_1(BT068295|pid:none) Zea mays full-length cDNA clone ZM...   260   6e-68
(Q56XG6) RecName: Full=DEAD-box ATP-dependent RNA helicase 15;  ...   258   2e-67
(Q6BME5) RecName: Full=ATP-dependent RNA helicase SUB2;         ...   258   2e-67
(Q5KNA3) RecName: Full=ATP-dependent RNA helicase SUB2;         ...   258   2e-67
protein update 2009. 6.13
PSORT 

 psg: 0.61  gvh: 0.57  alm: 0.28  top: 0.10  tms: 0.07  mit: 0.25  mip: 0.14
 nuc: 0.23  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.24  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: endoplasmic reticulum
	 12.0 %: Golgi
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SSJ233 is cyt
5' end seq. ID SSJ233F
5' end seq. 
>SSJ233F.Seq
GATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAA
TCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATA
CTATGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATT
AGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAA
GATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGA
TCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAA
TATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGC
TGAATCTGCCGATACCTATCTTCACAGAGTAGGTCGTGCTGGTCGTTTTGGTACCAAGGG
TTTAGCCATTTCTTTTGTTCCTTCAAAAGAAGATCCAGTACTTGAACAAGTTCAATCTAA
ATTTGTTGTTTCAATTAAAGAACTTGTTGCAACCCCAGATCCAAGTACTTATATGTCTGG
TTAAAAAAAAAAAAAAAAAAAAAAAAAA----------
Length of 5' end seq. 628
3' end seq. ID SSJ233Z
3' end seq. 
>SSJ233Z.Seq
----------CCCNCACCTCCGATTTGGGGGAATCTGCCGGTCCCTTTTTTCCCGGGGTT
GGTCNTGCTGGCCGTTTTGGTCCCGGGGGTTTCGCCATTTCTTTTGNCCCCTCAAAGGGG
GNCCCCGTTCTTGGACAGGTTCCATCTAAATTTGTTGTTTCAATTTAGGGACTTGTTGCA
CCCCCCGGTCCCGGTTCTTTTTTGGCTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAACCC
TTTTTGTTTTTAAATCCCTTAAAAAAAAATTAAAAAAAAAATTAATAAATTTCAAGTTTA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAA
Length of 3' end seq. 348
Connected seq. ID SSJ233P
Connected seq. 
>SSJ233P.Seq
GATGTTTTCAGCTACCCTCTCTGATACCATTCGTCCAATCTGTAAGAAGTTTATGAACAA
TCCATTGGAAATCTACATCAATGATGGTAGTAAACTCACTCTCCATGGTCTTCAACAATA
CTATGTACCAATCACTGAAGAACAAAAGAATAAAAAACTCATTGAACTCTTGGATTCATT
AGACTTTAATCAAGCCGTTATTTTCGTCAAATCTGTTAGACGTGCTGATGCCTTAAATAA
GATCCTCCAAGATATTGGTTTCCCATCCATCTGTATTCATCGTGACCTCGATCAAAAGGA
TCGTATCGAACAATACCGTAAATTCAAAAACTTTGAATCTCGTATCATGGTTGCCACTAA
TATCTTTGGTCGTGGTATCGATATTGAACGTGTCAATGTCGTCATCAACTACGATATGGC
TGAATCTGCCGATACCTATCTTCACAGAGTAGGTCGTGCTGGTCGTTTTGGTACCAAGGG
TTTAGCCATTTCTTTTGTTCCTTCAAAAGAAGATCCAGTACTTGAACAAGTTCAATCTAA
ATTTGTTGTTTCAATTAAAGAACTTGTTGCAACCCCAGATCCAAGTACTTATATGTCTGG
TTAAAAAAAAAAAAAAAAAAAAAAAAAA----------CCCNCACCTCCGATTTGGGGGA
ATCTGCCGGTCCCTTTTTTCCCGGGGTTGGTCNTGCTGGCCGTTTTGGTCCCGGGGGTTT
CGCCATTTCTTTTGNCCCCTCAAAGGGGGNCCCCGTTCTTGGACAGGTTCCATCTAAATT
TGTTGTTTCAATTTAGGGACTTGTTGCACCCCCCGGTCCCGGTTCTTTTTTGGCTGGTTT
AAAAAAAAAAAAAAAAAAAAAAAAACCCTTTTTGTTTTTAAATCCCTTAAAAAAAAATTA
AAAAAAAAATTAATAAATTTCAAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAACAAA
Length of connected seq. 976
Full length Seq ID -
Full length Seq. -
Length of full length seq. -