>SSJ213 (SSJ213Q) /CSM/SS/SSJ2-A/SSJ213Q.Seq.d/
AAATGTTGCTCAACCTCAACTTTCAAGTTTTGATACAAATGAAGATTCAAGTAGTCAAAT
GATGGGTTTAAAACCAATTAAAGTAAATATCCCAACAACTGGTCAACACTTTAAATTAGA
ACAACTTTTAGTAATTAGTACTGAAATTAAATTACAAGTTCCTTATAAAATGAAAAAATC
TTGTTGTTAAAAAAAAAAAAAAAAAAAAAAGAATAAAATTTATTATGTAATTAGAAAAAA
TA

NVAQPQLSSFDTNEDSSSQMMGLKPIKVNIPTTGQHFKLEQLLVISTEIKLQVPYKMKKS
CC*kkkkkkknkiyyvirkn

Frame A:
kccststfkf*yk*rfk*sndgfktn*skypnnwstl*irttfsn*y*n*itssl*neki
lllkkkkkkke*nllcn*kk


Frame B:
NVAQPQLSSFDTNEDSSSQMMGLKPIKVNIPTTGQHFKLEQLLVISTEIKLQVPYKMKKS
CC*kkkkkkknkiyyvirkn


Frame C:
mllnlnfqvliqmkiqvvk*wv*nqlk*isqqlvntln*nnf**lvlklnykflik*knl
vvkkkkkkkrikfim*leki

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM149 (SSM149Q) /CSM/SS/SSM1-C/SSM149Q.Seq.d/                        373   e-103
SSJ213 (SSJ213Q) /CSM/SS/SSJ2-A/SSJ213Q.Seq.d/                        373   e-103
SSG607 (SSG607Q) /CSM/SS/SSG6-A/SSG607Q.Seq.d/                        373   e-103
SLC135 (SLC135Q) /CSM/SL/SLC1-B/SLC135Q.Seq.d/                        329   1e-89
VHB516 (VHB516Q) /CSM/VH/VHB5-A/VHB516Q.Seq.d/                        325   2e-88
VHI672 (VHI672Q) /CSM/VH/VHI6-C/VHI672Q.Seq.d/                        315   2e-85
VHG738 (VHG738Q) /CSM/VH/VHG7-B/VHG738Q.Seq.d/                        315   2e-85
VHC452 (VHC452Q) /CSM/VH/VHC4-C/VHC452Q.Seq.d/                        315   2e-85
VHB160 (VHB160Q) /CSM/VH/VHB1-C/VHB160Q.Seq.d/                        315   2e-85
CFH264 (CFH264Q) /CSM/CF/CFH2-C/CFH264Q.Seq.d/                        315   2e-85

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    36   2e-04  9
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            34   0.011  12
AB063522|AB063522.2 Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA, complete genome, section 2/2.    36   0.013  9
AE001117|AE001117.1 Borrelia burgdorferi B31 (section 3 of 70) of the complete genome.    34   0.026  5
AC145413|AC145413.2 Sus scrofa clone RP44-386P23, WORKING DRAFT SEQUENCE, 4 ordered pieces.    34   0.039  6
CB039292|CB039292.1 As_L3_32G02_SKPL Ascaris suum (parasitic nematode) L3 stage Ascaris suum cDNA clone As_L3_32G02 5' similar to ZK1248.16 CE29634 locus:lec-5 status:Confirmed TR:Q23426, mRNA sequence.    34   0.043  2
D00384|D00384.1 Rat (SHR strain) SX1 gene.    48   0.055  1
AE014017|AE014017.1 Buchnera aphidicola str. Bp (Baizongia pistaciae), section 2 of 2 of the complete genome.    30   0.14   9
AC027415|AC027415.3 Homo sapiens chromosome 3 clone RP11-692O13 map 3, WORKING DRAFT SEQUENCE, 26 unordered pieces.    34   0.18   5
AC009424|AC009424.2 Homo sapiens clone RP11-45E1, *** SEQUENCING IN PROGRESS ***, 1 ordered pieces.    46   0.22   1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 214,101,397

 psg: 0.75  gvh: 0.41  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: vacuolar
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSJ213 is nuc

>SSJ213E.Seq
AAATGTTGCTCAACCTCAACTTTCAAGTTTTGATACAAATGAAGATTCAAGTAGTCAAAT
GATGGGTTTAAAACCAATTAAAGTAAATATCCCAACAACTGGTCAACACTTTAAATTAGA
ACAACTTTTAGTAATTAGTACTGAAATTAAATTACAAGTTCCTTATAAAATGAAAAAATC
TTGTTGTTAAAAAAAAAAAAAAAAAAAAAAGAATAAAATTTATTATGTAATTAGAAAAAA
TA