>SSJ212 (SSJ212Q) /CSM/SS/SSJ2-A/SSJ212Q.Seq.d/
CACAAAAAAAAAAAAAAAAAAGAAAGAATAAAATGCCATCAGCTCCACATTATTCTTCTA
AATATTATGACGATAAATATGAATACAGACATGTAATTTTACCATCAGAAATATCATCCC
TTATCCCAAGAGATGTGTTATTAACTGAAGATGAATGTAGAAAATTAGGAATTAGACAAT
CTGATGGTTGGGAACATTATGCAAATCATAAACCAGAACCACATATCCTTTTATTTAGAA
GACCACACAGCGGTATTCCAAATGATGTTGATTATTTGTAAATTACTATTTCATTTTTTT
TCTTTTTTTTTAAATAATTAAAAAAAAAAAAAGAAAAAAAAAAAAAACAAAGAAAAAAAA
AAAAXXXXXXXXXXAACAACCAGGGAAAAAAGGTGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAATAGGAGGGGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATAACAATAACAATATGTGTGTTAAGTCGCTAATTATATAAATAAAGGTTATTTAATAT
AAAATAATTCATAAATAAATAAAAAACAATAATAAA

tkkkkkkke*naisstlff*il*r*i*iqtcnftirniipypkrcvin*r*m*kirn*ti
*wlgtlcks*trttypfi*kttqrysk*c*lfvnyyfifflff*IIKKKKRKKKKTKKKK
K---

---TTREKRWKKKKKKKKKKIGGGVKKKKKKKKKKKKKNNNNNMCVKSLII*ikvi*yki
ihk*iknnnk

Frame A:
hkkkkkkerikchqlhiillnimtinmntdm*fyhqkyhplsqemcy*lkmnven*eldn
lmvgnimqiinqnhisfyledhtavfqmmliickllfhffsfflnn*kkkkkkkknkekk
k---

---nnqgkkvekkkkkkkkknrrggkkkkkkkkkkkkkk*q*qyvc*vanyinkgyli*n
ns*inkkq**

Frame B:
tkkkkkkke*naisstlff*il*r*i*iqtcnftirniipypkrcvin*r*m*kirn*ti
*wlgtlcks*trttypfi*kttqrysk*c*lfvnyyfifflff*IIKKKKRKKKKTKKKK
K---

---TTREKRWKKKKKKKKKKIGGGVKKKKKKKKKKKKKNNNNNMCVKSLII*ikvi*yki
ihk*iknnnk

Frame C:
qkkkkkrknkmpsaphysskyyddkyeyrhvilpseissliprdvlltedecrklgirqs
dgwehyanhkpephillfrrphsgipndvdyl*itisffffffk*lkkkkekkkkqrkkk
---

---qpgkkggkkkkkkkkkk*egg*kkkkkkkkkkkkkititicvlsr*lyk*rlfnik*
fink*ktii

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSJ212 (SSJ212Q) /CSM/SS/SSJ2-A/SSJ212Q.Seq.d/                        539   e-152
FC-BI03 (FC-BI03Q) /CSM/FC/FC-BI/FC-BI03Q.Seq.d/                      539   e-152
VHG679 (VHG679Q) /CSM/VH/VHG6-D/VHG679Q.Seq.d/                         34   2.2
VHF425 (VHF425Q) /CSM/VH/VHF4-B/VHF425Q.Seq.d/                         34   2.2
FC-AA18 (FC-AA18Q) /CSM/FC/FC-AA/FC-AA18Q.Seq.d/                       34   2.2
AHA671 (AHA671Q) /CSM/AH/AHA6-C/AHA671Q.Seq.d/                         34   2.2
VSI290 (VSI290Q) /CSM/VS/VSI2-D/VSI290Q.Seq.d/                         32   8.8
VSH848 (VSH848Q) /CSM/VS/VSH8-B/VSH848Q.Seq.d/                         32   8.8
VSH510 (VSH510Q) /CSM/VS/VSH5-A/VSH510Q.Seq.d/                         32   8.8
VHK629 (VHK629Q) /CSM/VH/VHK6-B/VHK629Q.Seq.d/                         32   8.8

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   258   e-131  6
AL407391|AL407391.1 T7 end of clone AV0AA001A09 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    44   0.002  2
BP118342|BP118342.1 Bombyx mori cDNA, clone:ce--1774.              48   0.004  2
BQ482678|BQ482678.1 ke53f07.y1 Dirofilaria immitis adult SL1 TOPO v1 Dirofilaria immitis cDNA similar to SW:CKS1_CAEEL Q17868 CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT. [1] ;, mRNA sequence.    50   0.035  1
Z28352|Z28352.1 P.vulgata mRNA for suc1 homologue.                 48   0.14   1
AC015527|AC015527.3 Homo sapiens chromosome 2 clone RP11-129L17 map 2, WORKING DRAFT SEQUENCE, 11 unordered pieces.    42   1.3    3
BX928757|BX928757.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-74M19.    42   1.7    3
AC095502|AC095502.6 Rattus norvegicus clone CH230-7P14, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42   8.5    1
AC095079|AC095079.5 Rattus norvegicus clone CH230-6P12, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   8.5    1
BX005348|BX005348.8 Zebrafish DNA sequence from clone DKEY-245J21 in linkage group 11.    42   8.5    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(B0G102) RecName: Full=Cyclin-dependent kinases regulatory subun...   153   4e-36
BT079632_1(BT079632|pid:none) Esox lucius clone eluc-evq-536-187...    86   5e-16
FJ623275_1(FJ623275|pid:none) Scylla serrata CDC28 protein kinas...    86   7e-16
BT056561_1(BT056561|pid:none) Salmo salar clone ssal-sjb-009-330...    86   7e-16
BT056702_1(BT056702|pid:none) Salmo salar clone ssal-evd-521-270...    86   7e-16
EU975486_1(EU975486|pid:none) Zea mays clone 490762 cyclin-depen...    85   1e-15
EU954123_1(EU954123|pid:none) Zea mays clone 1456336 cyclin-depe...    85   2e-15
EU953582_1(EU953582|pid:none) Zea mays clone 1436585 cyclin-depe...    85   2e-15
AJ606021_1(AJ606021|pid:none) Triticum aestivum mRNA for putativ...    84   2e-15
(A2XCH8) RecName: Full=Cyclin-dependent kinases regulatory subun...    84   3e-15

 psg: 0.34  gvh: -0.33  alm: 0.75  top: 0.53  tms: 0.00  mit: 0.42  mip: 0.00
 nuc: 3.22  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSJ212 is nuc

>SSJ212F.Seq
CACAAAAAAAAAAAAAAAAAAGAAAGAATAAAATGCCATCAGCTCCACATTATTCTTCTA
AATATTATGACGATAAATATGAATACAGACATGTAATTTTACCATCAGAAATATCATCCC
TTATCCCAAGAGATGTGTTATTAACTGAAGATGAATGTAGAAAATTAGGAATTAGACAAT
CTGATGGTTGGGAACATTATGCAAATCATAAACCAGAACCACATATCCTTTTATTTAGAA
GACCACACAGCGGTATTCCAAATGATGTTGATTATTTGTAAATTACTATTTCATTTTTTT
TCTTTTTTTTTAAATAATTAAAAAAAAAAAAAGAAAAAAAAAAAAAACAAAGAAAAAAAA
AAAA----------

>SSJ212Z.Seq
----------AACAACCAGGGAAAAAAGGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAATAGGAGGGGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATA
ACAATAACAATATGTGTGTTAAGTCGCTAATTATATAAATAAAGGTTATTTAATATAAAA
TAATTCATAAATAAATAAAAAACAATAATAAA

>SSJ212P.Seq
CACAAAAAAAAAAAAAAAAAAGAAAGAATAAAATGCCATCAGCTCCACATTATTCTTCTA
AATATTATGACGATAAATATGAATACAGACATGTAATTTTACCATCAGAAATATCATCCC
TTATCCCAAGAGATGTGTTATTAACTGAAGATGAATGTAGAAAATTAGGAATTAGACAAT
CTGATGGTTGGGAACATTATGCAAATCATAAACCAGAACCACATATCCTTTTATTTAGAA
GACCACACAGCGGTATTCCAAATGATGTTGATTATTTGTAAATTACTATTTCATTTTTTT
TCTTTTTTTTTAAATAATTAAAAAAAAAAAAAGAAAAAAAAAAAAAACAAAGAAAAAAAA
AAAA----------AACAACCAGGGAAAAAAGGTGGAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAATAGGAGGGGGGGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AATAACAATAACAATATGTGTGTTAAGTCGCTAATTATATAAATAAAGGTTATTTAATAT
AAAATAATTCATAAATAAATAAAAAACAATAATAAA