SSJ208
Library SS
(Link to library)
Clone ID SSJ208
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13989-1
Original site URL
Representative seq. ID SSJ208Z
(Link to Original site)
Representative DNA sequence
>SSJ208 (SSJ208Q) /CSM/SS/SSJ2-A/SSJ208Q.Seq.d/
XXXXXXXXXXGAAAACCTAGGAGAACGTAGTTGAGATCCCATTGTTGCATCCAGAGAAAT
TTGTAAATTTTAGGTATTGATCCCCCAAAGGGTGTGTCGATGTATGGTCCACCAGGTACT
GGTAAGACATTGTGTGCTCGTGCCGTTGCAAATCGTACTGATGCCGCTTTTGTCCGTGTT
ATTGGTTCAGAGTTGGTGCAAAAGTATGTTGGTGAGGGTGCACGTATGGTACGTGATCTC
TTTCAAATGGCACGTTCAAAAGAAGGCATGTATTATCTTTTTCGATGAAGTTGATGCAAT
TGGTGGTGCCCGTTTCGATGATGGTGCAGGCGGTGACAATGAGGTTCAACGTACTATGTT
AGAGTTGATCAATCAATTGGATGGTTTCGATCCACGTGGTAACATTAAAGTATTGATGGC
AACCAATCGTCCAGATACTTTGGATCCAGCTCTTCTTCGTCCAGGTCGTCTCGATCGTAA
GGTTGAATTTGGTTTACCAGACTTGGAGGGTCGTGCTCACATCTTTACCATTCATGCCAA
AACTATGAGCTGTGCTCGTGATATTCGTTTCGAATTATTGGCTCGTCTTTGTCCAAACTC
AACTGGTGCCGATATTAGATCCGTTTGTACCGAAGCTGGTATGTTTGCAATTCGTGCTCG
TAGAAAGGTTGTAAGTGAAAAAGACTTTTTAGAAGCTATTGATAAAGTTATTAAATCTTA
TGCTAAATTTAGTGCAACTTCAAGATATATGCATTATAATTAAATTTTTTTAAAAAAAAA
AAAAAAAATNTTATATATATTTCATA
sequence update 1998. 1. 7
Translated Amino Acid sequence
---nlgers*dpivasreickf*VLIPQRVCRCMVHQVLVRHCVLVPLQIVLMPLLSVLL
VQSWCKSMLVRVHVWYVISFKWHVQKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLE
LINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKT
MSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYA
KFSATSRYMHYN*iflkkkkkxlyifh


Translated Amino Acid sequence (All Frames)
Frame A:
---kt*envveipllhpekfvnfry*spkgcvdvwstryw*divcscrcksy*crfcpcy
wfrvgakvcw*gctygt*slsngtfkrrhvlsfsmklmqlvvpvsmmvqavtmrfnvlc*
s*sinwmvsihvvtlky*wqpivqilwiqlffvqvvsivrlnlvyqtwrvvltslpfmpk
l*avlvifvsnywlvfvqtqlvpildpfvpklvclqfvlverl*vkktf*kllikllnlm
lnlvqlqdiciiikff*kkkkkxyiyfi


Frame B:
---kprrt*lrshcciqrnl*ilgidppkgvsmygppgtgktlcaravanrtdaafvrvi
gselvqkyvgegarmvrdlfqmarskegmyylfr*s*cnwwcpfr*wcrr*q*gstyyvr
vdqsigwfrstw*h*sidgnqssryfgssssssrssrs*g*iwftrlggscshlyhscqn
yelcs*ysfriigsslsklnwcry*irlyrswyvcnscs*kgck*krlfrsy**sy*ilc
*i*cnfkiyal*lnffkkkkknxiyis


Frame C:
---nlgers*dpivasreickf*VLIPQRVCRCMVHQVLVRHCVLVPLQIVLMPLLSVLL
VQSWCKSMLVRVHVWYVISFKWHVQKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLE
LINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKT
MSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYA
KFSATSRYMHYN*iflkkkkkxlyifh


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSJ208 (SSJ208Q) /CSM/SS/SSJ2-A/SSJ208Q.Seq.d/ 1509 0.0
VFC836 (VFC836Q) /CSM/VF/VFC8-B/VFC836Q.Seq.d/ 1320 0.0
SLC195 (SLC195Q) /CSM/SL/SLC1-D/SLC195Q.Seq.d/ 1310 0.0
AFO781 (AFO781Q) /CSM/AF/AFO7-D/AFO781Q.Seq.d/ 1306 0.0
SLE614 (SLE614Q) /CSM/SL/SLE6-A/SLE614Q.Seq.d/ 1283 0.0
AFO830 (AFO830Q) /CSM/AF/AFO8-B/AFO830Q.Seq.d/ 1283 0.0
SFD763 (SFD763Q) /CSM/SF/SFD7-C/SFD763Q.Seq.d/ 1253 0.0
AFN448 (AFN448Q) /CSM/AF/AFN4-B/AFN448Q.Seq.d/ 1243 0.0
AFL672 (AFL672Q) /CSM/AF/AFL6-C/AFL672Q.Seq.d/ 1217 0.0
SFL468 (SFL468Q) /CSM/SF/SFL4-C/SFL468Q.Seq.d/ 1134 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence. 1009 0.0 4
AL407968|AL407968.1 T3 end of clone AV0AA005G07 of library AV0AA from strain CBS 379 of Saccharomyces exiguus. 127 2e-46 4
AL021767|AL021767.1 S.pombe chromosome II cosmid c16C6. 103 2e-38 5
AX829332|AX829332.1 Sequence 52 from Patent WO03072602. 68 1e-37 7
AX818302|AX818302.1 Sequence 52 from Patent EP1338608. 68 1e-37 7
AX596480|AX596480.1 Sequence 2134 from Patent EP1258494. 68 1e-37 7
Z28145|Z28145.1 S.cerevisiae chromosome XI reading frame ORF YKL145w. 68 1e-36 7
Z78012|Z78012.1 Caenorhabditis elegans cosmid C52E4. 107 1e-36 6
Z22817|Z22817.1 S.cerevisiae CIM5 gene for putative ATPase. 68 6e-36 7
X73571|X73571.1 S.cerevisiae YTA3 gene. 68 8e-36 7
dna update 2004. 2.15
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC041186_1(BC041186|pid:none) Xenopus laevis proteasome 26S ATPa... 270 e-104
BT075118_1(BT075118|pid:none) Osmerus mordax clone omor-rgc-504-... 270 e-104
BC053187_1(BC053187|pid:none) Danio rerio proteasome (prosome, m... 270 e-104
AJ719466_1(AJ719466|pid:none) Gallus gallus mRNA for hypothetica... 270 e-104
(P35998) RecName: Full=26S protease regulatory subunit 7; AltNam... 270 e-104
EU446703_1(EU446703|pid:none) Synthetic construct Homo sapiens c... 270 e-104
AB075520_1(AB075520|pid:none) Homo sapiens neuroblastoma cDNA, c... 270 e-104
AY814884_1(AY814884|pid:none) Schistosoma japonicum SJCHGC09284 ... 268 e-104
AC093701_1(AC093701|pid:none) Homo sapiens BAC clone RP11-1252L1... 270 e-104
AK298821_1(AK298821|pid:none) Homo sapiens cDNA FLJ52353 complet... 270 e-104
protein update 2009. 6.13
PSORT

psg: 0.85 gvh: 0.75 alm: 0.44 top: 0.43 tms: 0.00 mit: 0.51 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: extracellular, including cell wall
32.0 %: mitochondrial
12.0 %: nuclear
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for SSJ208 is exc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSJ208Z
3' end seq.
>SSJ208Z.Seq
----------GAAAACCTAGGAGAACGTAGTTGAGATCCCATTGTTGCATCCAGAGAAAT
TTGTAAATTTTAGGTATTGATCCCCCAAAGGGTGTGTCGATGTATGGTCCACCAGGTACT
GGTAAGACATTGTGTGCTCGTGCCGTTGCAAATCGTACTGATGCCGCTTTTGTCCGTGTT
ATTGGTTCAGAGTTGGTGCAAAAGTATGTTGGTGAGGGTGCACGTATGGTACGTGATCTC
TTTCAAATGGCACGTTCAAAAGAAGGCATGTATTATCTTTTTCGATGAAGTTGATGCAAT
TGGTGGTGCCCGTTTCGATGATGGTGCAGGCGGTGACAATGAGGTTCAACGTACTATGTT
AGAGTTGATCAATCAATTGGATGGTTTCGATCCACGTGGTAACATTAAAGTATTGATGGC
AACCAATCGTCCAGATACTTTGGATCCAGCTCTTCTTCGTCCAGGTCGTCTCGATCGTAA
GGTTGAATTTGGTTTACCAGACTTGGAGGGTCGTGCTCACATCTTTACCATTCATGCCAA
AACTATGAGCTGTGCTCGTGATATTCGTTTCGAATTATTGGCTCGTCTTTGTCCAAACTC
AACTGGTGCCGATATTAGATCCGTTTGTACCGAAGCTGGTATGTTTGCAATTCGTGCTCG
TAGAAAGGTTGTAAGTGAAAAAGACTTTTTAGAAGCTATTGATAAAGTTATTAAATCTTA
TGCTAAATTTAGTGCAACTTCAAGATATATGCATTATAATTAAATTTTTTTAAAAAAAAA
AAAAAAAATNTTATATATATTTCATA
Length of 3' end seq. 796
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -